دورية أكاديمية

The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.

التفاصيل البيبلوغرافية
العنوان: The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.
المؤلفون: Royer M; UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France., Cohen D; UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France., Aubry N; UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France., Vendramin V; IGA Technology Services, I-33100 Udine, Italy., Scalabrin S; IGA Technology Services, I-33100 Udine, Italy., Cattonaro F; IGA Technology Services, I-33100 Udine, Italy., Bogeat-Triboulot MB; UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France triboulo@nancy.inra.fr., Hummel I; UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.
المصدر: Journal of experimental botany [J Exp Bot] 2016 Nov; Vol. 67 (21), pp. 5961-5973. Date of Electronic Publication: 2016 Oct 04.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9882906 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2431 (Electronic) Linking ISSN: 00220957 NLM ISO Abbreviation: J Exp Bot Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Oxford, UK : Oxford University Press,
مواضيع طبية MeSH: Osmotic Pressure/*physiology , Plant Root Cap/*growth & development, Arabidopsis/growth & development ; Arabidopsis/metabolism ; Arabidopsis/physiology ; Biomechanical Phenomena/physiology ; Gene Expression Regulation, Developmental/genetics ; Gene Expression Regulation, Developmental/physiology ; Gene Expression Regulation, Plant/genetics ; Gene Expression Regulation, Plant/physiology ; Oligonucleotide Array Sequence Analysis ; Plant Root Cap/metabolism ; Plant Root Cap/physiology ; Sequence Analysis, RNA ; Signal Transduction/physiology
مستخلص: Molecular regulation of growth must include spatial and temporal coupling of cell production and cell expansion. The underlying mechanisms, especially under environmental challenge, remain obscure. Spatial patterns of cell processes make the root apex well suited to deciphering stress signaling pathways, and to investigating both processes. Kinematics and RNA-sequencing were used to analyze the immediate growth response of hydroponically grown Populus nigra cuttings submitted to osmotic stress. About 7400 genes and unannotated transcriptionally active regions were differentially expressed between the division and elongation zones. Following the onset of stress, growth decreased sharply, probably due to mechanical effects, before recovering partially. Stress impaired cell expansion over the apex, progressively shortened the elongation zone, and reduced the cell production rate. Changes in gene expression revealed that growth reduction was mediated by a shift in hormone homeostasis. Osmotic stress rapidly elicited auxin, ethylene, and abscisic acid. When growth restabilized, transcriptome remodeling became complex and zone specific, with the deployment of hormone signaling cascades, transcriptional regulators, and stress-responsive genes. Most transcriptional regulations fit growth reduction, but stress also promoted expression of some growth effectors, including aquaporins and expansins Together, osmotic stress interfered with growth by activating regulatory proteins rather than by repressing the machinery of expansive growth.
(© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
References: Plant Physiol. 1994 Jan;104(1):247-254. (PMID: 12232076)
Plant J. 2012 Dec;72(5):805-16. (PMID: 22882529)
Plant Physiol. 2001 Aug;126(4):1471-9. (PMID: 11500546)
Plant Physiol. 1997 Jun;114(2):519-527. (PMID: 12223725)
J Exp Bot. 2015 Mar;66(5):1387-95. (PMID: 25540436)
BMC Plant Biol. 2009 Feb 13;9:20. (PMID: 19216774)
J Exp Bot. 2014 Jun;65(10):2633-43. (PMID: 24474807)
J Exp Bot. 2011 Mar;62(6):2063-77. (PMID: 21239383)
Plant Cell. 2003 Nov;15(11):2532-50. (PMID: 14555694)
PLoS Comput Biol. 2014 Oct 30;10(10):e1003910. (PMID: 25358093)
Plant Mol Biol. 2012 Nov;80(4-5):405-18. (PMID: 22968620)
Plant Physiol. 2007 Oct;145(2):305-16. (PMID: 17720760)
FEBS Lett. 2007 May 25;581(12):2227-36. (PMID: 17382935)
J Exp Bot. 2016 Feb;67(4):1095-107. (PMID: 26463995)
Plant Physiol. 1988 May;87(1):50-7. (PMID: 16666126)
Plant Physiol. 2012 Sep;160(1):83-92. (PMID: 22843665)
Genome Biol. 2013 Apr 25;14(4):R36. (PMID: 23618408)
PLoS One. 2013 Dec 23;8(12):e85024. (PMID: 24376861)
BMC Genomics. 2010 Nov 12;11:630. (PMID: 21073700)
PLoS One. 2014 Jan 20;9(1):e86217. (PMID: 24465967)
FEBS Lett. 2004 Apr 9;563(1-3):82-6. (PMID: 15063727)
J Exp Bot. 2011 Jun;62(10):3273-88. (PMID: 21212299)
Bioinformatics. 2009 May 1;25(9):1105-11. (PMID: 19289445)
Plant Cell. 2012 Nov;24(11):4483-97. (PMID: 23161888)
J Exp Bot. 2004 Nov;55(407):2343-51. (PMID: 15448181)
J Theor Biol. 1965 Mar;8(2):264-75. (PMID: 5876240)
Nat Biotechnol. 2010 May;28(5):511-5. (PMID: 20436464)
Cell. 2010 Nov 12;143(4):606-16. (PMID: 21074051)
Plant Physiol. 2005 Jun;138(2):734-43. (PMID: 15863702)
Curr Opin Plant Biol. 2009 Apr;12(2):165-71. (PMID: 19117793)
Science. 2007 Nov 2;318(5851):801-6. (PMID: 17975066)
Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4543-8. (PMID: 19240210)
Plant Cell. 2011 Sep;23(9):3335-52. (PMID: 21954460)
Plant Cell. 2007 Oct;19(10):3037-57. (PMID: 17933900)
Plant Physiol. 2012 Dec;160(4):1985-95. (PMID: 23071251)
Bioinformatics. 2005 Sep 15;21(18):3674-6. (PMID: 16081474)
Plant Cell. 2005 Feb;17(2):444-63. (PMID: 15659631)
Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):10028-33. (PMID: 23720308)
Nat Rev Mol Cell Biol. 2005 Nov;6(11):850-61. (PMID: 16261190)
Curr Opin Plant Biol. 2011 Jun;14(3):283-9. (PMID: 21388861)
Plant Cell. 2011 Jun;23(6):2169-83. (PMID: 21719693)
Physiol Plant. 2015 May;154(1):39-53. (PMID: 25185760)
Stat Appl Genet Mol Biol. 2004;3:Article3. (PMID: 16646809)
Nat Cell Biol. 2011 Feb;13(2):124-31. (PMID: 21258370)
PLoS One. 2013;8(2):e55506. (PMID: 23393587)
New Phytol. 2012 Jun;194(4):895-909. (PMID: 22404712)
Plant Cell Environ. 2010 Apr;33(4):590-603. (PMID: 19895398)
Plant Cell Environ. 2002 Feb;25(2):211-222. (PMID: 11841664)
Plant Physiol. 1990 Jun;93(2):648-51. (PMID: 16667517)
Arabidopsis Book. 2013 Nov 01;11:e0166. (PMID: 24273463)
Annu Rev Plant Biol. 2009;60:279-304. (PMID: 19575584)
Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2361-6. (PMID: 20133881)
Plant Cell. 2009 Oct;21(10):3152-69. (PMID: 19837870)
Plant Cell Physiol. 2010 Sep;51(9):1537-47. (PMID: 20668225)
Wiley Interdiscip Rev Dev Biol. 2013 Jan-Feb;2(1):65-73. (PMID: 23799631)
J Exp Bot. 2013 Jan;64(1):83-108. (PMID: 23162116)
Curr Biol. 2010 Oct 12;20(19):1697-706. (PMID: 20888232)
Plant Cell Physiol. 2014 May;55(5):897-912. (PMID: 24486766)
Plant Physiol. 1998 Apr;116(4):1515-26. (PMID: 9536070)
Plant Cell. 2011 Jun;23(6):2155-68. (PMID: 21673078)
BMC Plant Biol. 2012 Jul 23;12:112. (PMID: 22824128)
Nat Protoc. 2012 Mar 01;7(3):562-78. (PMID: 22383036)
Bioinformatics. 2011 Sep 1;27(17):2325-9. (PMID: 21697122)
J Exp Bot. 2007;58(2):279-89. (PMID: 16990373)
Plant J. 2003 Dec;36(5):577-88. (PMID: 14617060)
Plant Cell. 2005 Jul;17(7):1908-25. (PMID: 15937229)
Int J Mol Sci. 2015 Aug 14;16(8):19195-224. (PMID: 26287175)
Int J Dev Biol. 1997 Dec;41(6):907-15. (PMID: 9449467)
BMC Plant Biol. 2008 Apr 03;8:32. (PMID: 18387193)
Plant J. 2007 Apr;50(2):347-63. (PMID: 17376166)
Plant J. 2001 Aug;27(4):325-33. (PMID: 11532178)
Science. 2003 Dec 12;302(5652):1956-60. (PMID: 14671301)
Curr Opin Biotechnol. 2010 Apr;21(2):197-203. (PMID: 20363612)
J Exp Bot. 2015 Apr;66(8):2145-54. (PMID: 25617469)
Plant Cell. 2011 May;23(5):1876-88. (PMID: 21558544)
Plant Cell. 2011 May;23(5):1772-94. (PMID: 21571950)
Plant Physiol. 2013 Jun;162(2):1092-109. (PMID: 23590974)
BMC Biol. 2010 Mar 04;8:18. (PMID: 20202192)
Biostatistics. 2003 Apr;4(2):249-64. (PMID: 12925520)
فهرسة مساهمة: Keywords: Division; Populus nigra; elongation; hormonal signaling; osmotic stress; root apical meristem; root growth; transcriptome
تواريخ الأحداث: Date Created: 20161006 Date Completed: 20171113 Latest Revision: 20220330
رمز التحديث: 20240829
مُعرف محوري في PubMed: PMC5100013
DOI: 10.1093/jxb/erw350
PMID: 27702994
قاعدة البيانات: MEDLINE
الوصف
تدمد:1460-2431
DOI:10.1093/jxb/erw350