دورية أكاديمية
Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants.
العنوان: | Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. |
---|---|
المؤلفون: | Calkins S; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Couger MB; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Jackson C; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Zandler J; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Hudgins GC; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Hanafy RA; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Budd C; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., French DP; Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States., Hoff WD; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States., Youssef N; 1110 S Innovation way, Stillwater, OK 74074, United States. |
المصدر: | Genomics data [Genom Data] 2016 Oct 07; Vol. 10, pp. 91-96. Date of Electronic Publication: 2016 Oct 07 (Print Publication: 2016). |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Elsevier Inc Country of Publication: United States NLM ID: 101634120 Publication Model: eCollection Cited Medium: Print ISSN: 2213-5960 (Print) Linking ISSN: 22135960 NLM ISO Abbreviation: Genom Data Subsets: PubMed not MEDLINE |
أسماء مطبوعة: | Original Publication: [New York, NY] : Elsevier Inc., [2013]-[2017] |
مستخلص: | Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 2174 protein-coding genes and 90 RNA genes. Based on the genomic analysis of KEGG pathways, the organism is expected to be a versatile heterotroph potentially capable of hydrolyzing the sugars glucose, fructose, mannose, and the amino acids alanine, aspartate, glutamate, glycine, threonine, cysteine, methionine, valine, isoleucine, leucine, lysine, arginine, phenylalanine, tyrosine, and tryptophan for energy production through aerobic respiration, with occasional lactate and acetate fermentation. Evidence for poly-gamma glutamate capsule and type IV Com system pili were identified in the genome. Based on COG analysis, the genome of S. hominis Hudgins clusters away from the previously published S. hominis genome ZBW5. |
References: | Genome Announc. 2015 Nov 19;3(6):. (PMID: 26586879) Nucleic Acids Res. 2013 Jul;41(12):e121. (PMID: 23598997) Future Microbiol. 2014;9(1):75-91. (PMID: 24328382) Int J Syst Bacteriol. 1998 Jul;48 Pt 3:799-812. (PMID: 9734034) Mol Microbiol. 2006 Jun;60(5):1091-8. (PMID: 16689787) Nucleic Acids Res. 2005 Jan 1;33(Database issue):D325-8. (PMID: 15608208) Nucleic Acids Res. 2014 Jan;42(Database issue):D251-8. (PMID: 24225317) Nat Rev Microbiol. 2011 Mar;9(3):166-76. (PMID: 21326273) J Clin Microbiol. 2005 Sep;43(9):4877-9. (PMID: 16145165) Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. (PMID: 26673716) PLoS One. 2011;6(12):e28919. (PMID: 22216142) Genome Announc. 2016 Mar 10;4(2):. (PMID: 26966197) Genome Announc. 2015 Sep 17;3(5):. (PMID: 26383650) J Vasc Surg Cases. 2015 Apr 21;1(2):81-83. (PMID: 31724579) Nucleic Acids Res. 2015 Aug 18;43(14):6761-71. (PMID: 26150420) Nat Genet. 2000 May;25(1):25-9. (PMID: 10802651) Nature. 2013 Jul 25;499(7459):431-7. (PMID: 23851394) PLoS One. 2013 Aug 12;8(8):e70538. (PMID: 23950955) Bioinformatics. 2016 Aug 1;32(15):2380-1. (PMID: 27153714) J Bacteriol. 2012 Sep;194(17):4761-2. (PMID: 22887665) Nat Biotechnol. 2008 May;26(5):541-7. (PMID: 18464787) Genome Res. 2008 May;18(5):821-9. (PMID: 18349386) PLoS Negl Trop Dis. 2014 May 29;8(5):e2897. (PMID: 24875186) BMC Bioinformatics. 2010 Mar 08;11:119. (PMID: 20211023) Mol Biol Evol. 2016 Jul;33(7):1870-4. (PMID: 27004904) Nucleic Acids Res. 2007 Jul;35(Web Server issue):W585-7. (PMID: 17517783) |
فهرسة مساهمة: | Keywords: Capsule; Detailed annotation; Draft genome sequence; Metabolic versatility; Staphylococcus hominis; Student Initiated Microbial Discovery (SIMD) project |
تواريخ الأحداث: | Date Created: 20161022 Latest Revision: 20240326 |
رمز التحديث: | 20240326 |
مُعرف محوري في PubMed: | PMC5065635 |
DOI: | 10.1016/j.gdata.2016.10.003 |
PMID: | 27766204 |
قاعدة البيانات: | MEDLINE |
تدمد: | 2213-5960 |
---|---|
DOI: | 10.1016/j.gdata.2016.10.003 |