دورية أكاديمية
Comparative Genomic Analysis for Genetic Variation in Sacbrood Virus of Apis cerana and Apis mellifera Honeybees From Different Regions of Vietnam.
| العنوان: | Comparative Genomic Analysis for Genetic Variation in Sacbrood Virus of Apis cerana and Apis mellifera Honeybees From Different Regions of Vietnam. |
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| المؤلفون: | Reddy KE; Center for Honeybee Disease Control, Animal and Plant Quarantine Agency, 480 Anyang 6 dong, Anyang 420-480, South Korea.; Plant Molecular Biology Lab, Department of Botany, S. K. University, Anantapur, Andhrapradesh, India.; Animal and Nutrition Physiology Team, National Institute of Animal Science, Rural Development Administration, #1500 Kongjwipatjwi-ro, Iseo-myeon, Wanju-gun, South Korea., Thu HT; Molecular Microbiology Lab, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.; Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam., Yoo MS; Center for Honeybee Disease Control, Animal and Plant Quarantine Agency, 480 Anyang 6 dong, Anyang 420-480, South Korea., Ramya M; Plant Molecular Biology Lab, Department of Botany, S. K. University, Anantapur, Andhrapradesh, India., Reddy BA; Department of Sericulture, S. K. University, Anantapur, Andhrapradesh, India., Lien NTK; Functional Genomics Lab, Institute of Genome Research, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam., Trang NTP; Department of Molecular Systematics and Conservation Genetics, Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam., Duong BTT; Molecular Microbiology Lab, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam., Lee HJ; Animal and Nutrition Physiology Team, National Institute of Animal Science, Rural Development Administration, #1500 Kongjwipatjwi-ro, Iseo-myeon, Wanju-gun, South Korea., Kang SW; Center for Honeybee Disease Control, Animal and Plant Quarantine Agency, 480 Anyang 6 dong, Anyang 420-480, South Korea., Quyen DV; Molecular Microbiology Lab, Institute of Biotechnology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.; Graduate University of Science and Technology, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.; University of Science and Technology of Ha Noi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam. |
| المصدر: | Journal of insect science (Online) [J Insect Sci] 2017 Sep 01; Vol. 17 (5). |
| نوع المنشور: | Comparative Study; Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Entomological Society of America Country of Publication: United States NLM ID: 101096396 Publication Model: Print Cited Medium: Internet ISSN: 1536-2442 (Electronic) Linking ISSN: 15362442 NLM ISO Abbreviation: J Insect Sci Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: Annapolis, MD : Entomological Society of America Original Publication: Tucson, Ariz. : University of Arizona Library, [2001?- |
| مواضيع طبية MeSH: | Bees/*virology , RNA Viruses/*genetics, Amino Acid Sequence ; Animals ; Genetic Variation ; Genome, Viral ; Phylogeny ; Vietnam |
| مستخلص: | Sacbrood virus (SBV) is one of the most common viral infections of honeybees. The entire genome sequence for nine SBV infecting honeybees, Apis cerana and Apis mellifera, in Vietnam, namely AcSBV-Viet1, AcSBV-Viet2, AcSBV-Viet3, AmSBV-Viet4, AcSBV-Viet5, AmSBV-Viet6, AcSBV-Viet7, AcSBV-Viet8, and AcSBV-Viet9, was determined. These sequences were aligned with seven previously reported complete genome sequences of SBV from other countries, and various genomic regions were compared. The Vietnamese SBVs (VN-SBVs) shared 91-99% identity with each other, and shared 89-94% identity with strains from other countries. The open reading frames (ORFs) of the VN-SBV genomes differed greatly from those of SBVs from other countries, especially in their VP1 sequences. The AmSBV-Viet6 and AcSBV-Viet9 genome encodes 17 more amino acids within this region than the other VN-SBVs. In a phylogenetic analysis, the strains AmSBV-Viet4, AcSBV-Viet2, and AcSBV-Viet3 were clustered in group with AmSBV-UK, AmSBV-Kor21, and AmSBV-Kor19 strains. Whereas, the strains AmSBV-Viet6 and AcSBV-Viet7 clustered separately with the AcSBV strains from Korea and AcSBV-VietSBM2. And the strains AcSBV-Viet8, AcSBV-Viet1, AcSBV-Viet5, and AcSBV-Viet9 clustered with the AcSBV-India, AcSBV-Kor and AcSBV-VietSBM2. In a Simplot graph, the VN-SBVs diverged stronger in their ORF regions than in their 5' or 3' untranslated regions. The VN-SBVs possess genetic characteristics which are more similar to the Asian AcSBV strains than to AmSBV-UK strain. Taken together, our data indicate that host specificity, geographic distance, and viral cross-infections between different bee species may explain the genetic diversity among the VN-SBVs in A. cerana and A. mellifera and other SBV strains. (© The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America.) |
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| فهرسة مساهمة: | Keywords: Apis cerana; Apis mellifera; Sacbrood virus; entire genome sequence; phylogenetic analysis |
| SCR Organism: | Sacbrood virus |
| تواريخ الأحداث: | Date Created: 20171109 Date Completed: 20171129 Latest Revision: 20201209 |
| رمز التحديث: | 20231215 |
| مُعرف محوري في PubMed: | PMC5634237 |
| DOI: | 10.1093/jisesa/iex077 |
| PMID: | 29117376 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1536-2442 |
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| DOI: | 10.1093/jisesa/iex077 |