دورية أكاديمية
Whole-genome sequencing reveals that Shewanella haliotis Kim et al. 2007 can be considered a later heterotypic synonym of Shewanella algae Simidu et al. 1990.
| العنوان: | Whole-genome sequencing reveals that Shewanella haliotis Kim et al. 2007 can be considered a later heterotypic synonym of Shewanella algae Simidu et al. 1990. |
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| المؤلفون: | Szeinbaum N; School of Biology, Georgia Institute of Technology, Atlanta, GA, USA., Kellum CE; School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA., Glass JB; School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA., Janda JM; Public Health Laboratory at Kern County, Bakersfield, CA, USA., DiChristina TJ; School of Biology, Georgia Institute of Technology, Atlanta, GA, USA. |
| المصدر: | International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Apr; Vol. 68 (4), pp. 1356-1360. Date of Electronic Publication: 2018 Mar 05. |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Microbiology Society Country of Publication: England NLM ID: 100899600 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1466-5034 (Electronic) Linking ISSN: 14665026 NLM ISO Abbreviation: Int J Syst Evol Microbiol Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: 2015- : London : Microbiology Society Original Publication: Reading, UK : Society for General Microbiology, c2000- |
| مواضيع طبية MeSH: | Genome, Bacterial* , Phylogeny*, Shewanella/*classification, Bacterial Typing Techniques ; DNA, Bacterial/genetics ; Nucleic Acid Hybridization ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Whole Genome Sequencing |
| مستخلص: | Previously, experimental DNA-DNA hybridization (DDH) between Shewanellahaliotis JCM 14758 T and Shewanellaalgae JCM 21037 T had suggested that the two strains could be considered different species, despite minimal phenotypic differences. The recent isolation of Shewanella sp. MN-01, with 99 % 16S rRNA gene identity to S. algae and S. haliotis, revealed a potential taxonomic problem between these two species. In this study, we reassessed the nomenclature of S. haliotis and S. algae using available whole-genome sequences. The whole-genome sequence of S. haliotis JCM 14758 T and ten S. algae strains showed ≥97.7 % average nucleotide identity and >78.9 % digital DDH, clearly above the recommended species thresholds. According to the rules of priority and in view of the results obtained, S. haliotis is to be considered a later heterotypic synonym of S. algae. Because the whole-genome sequence of Shewanella sp. strain MN-01 shares >99 % ANI with S. algae JCM 14758 T , it can be confidently identified as S. algae. |
| فهرسة مساهمة: | Keywords: Shewanella algae; Shewanella haliotis; heterotypic synonym |
| المشرفين على المادة: | 0 (DNA, Bacterial) 0 (RNA, Ribosomal, 16S) |
| تواريخ الأحداث: | Date Created: 20180306 Date Completed: 20180508 Latest Revision: 20191211 |
| رمز التحديث: | 20231215 |
| DOI: | 10.1099/ijsem.0.002678 |
| PMID: | 29504926 |
| قاعدة البيانات: | MEDLINE |
| تدمد: | 1466-5034 |
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| DOI: | 10.1099/ijsem.0.002678 |