دورية أكاديمية

How to get away with nonsense: Mechanisms and consequences of escape from nonsense-mediated RNA decay.

التفاصيل البيبلوغرافية
العنوان: How to get away with nonsense: Mechanisms and consequences of escape from nonsense-mediated RNA decay.
المؤلفون: Dyle MC; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, Colorado., Kolakada D; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, Colorado.; Molecular Biology Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, Colorado., Cortazar MA; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, Colorado., Jagannathan S; Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, Aurora, Colorado.; RNA Bioscience Initiative, University of Colorado Anschutz Medical Campus, Aurora, Colorado.
المصدر: Wiley interdisciplinary reviews. RNA [Wiley Interdiscip Rev RNA] 2020 Jan; Vol. 11 (1), pp. e1560. Date of Electronic Publication: 2019 Jul 29.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Review
اللغة: English
بيانات الدورية: Publisher: Wiley Country of Publication: United States NLM ID: 101536955 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1757-7012 (Electronic) Linking ISSN: 17577004 NLM ISO Abbreviation: Wiley Interdiscip Rev RNA Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Hoboken, NJ : Wiley, 2010-
مواضيع طبية MeSH: Codon, Nonsense/*genetics , Nonsense Mediated mRNA Decay/*genetics, Genetic Variation/genetics ; Humans
مستخلص: Nonsense-mediated RNA decay (NMD) is an evolutionarily conserved RNA quality control process that serves both as a mechanism to eliminate aberrant transcripts carrying premature stop codons, and to regulate expression of some normal transcripts. For a quality control process, NMD exhibits surprising variability in its efficiency across transcripts, cells, tissues, and individuals in both physiological and pathological contexts. Whether an aberrant RNA is spared or degraded, and by what mechanism, could determine the phenotypic outcome of a disease-causing mutation. Hence, understanding the variability in NMD is not only important for clinical interpretation of genetic variants but also may provide clues to identify novel therapeutic approaches to counter genetic disorders caused by nonsense mutations. Here, we discuss the current knowledge of NMD variability and the mechanisms that allow certain transcripts to escape NMD despite the presence of NMD-inducing features. This article is categorized under: RNA Turnover and Surveillance > Turnover/Surveillance Mechanisms RNA in Disease and Development > RNA in Disease RNA Turnover and Surveillance > Regulation of RNA Stability.
(© 2019 Wiley Periodicals, Inc.)
References: Biochimie. 2015 Jul;114:2-9. (PMID: 25446649)
PLoS Genet. 2011 Jul;7(7):e1002137. (PMID: 21750682)
Genes Dev. 2007 Mar 15;21(6):708-18. (PMID: 17369403)
PLoS Biol. 2008 Apr 29;6(4):e111. (PMID: 18447585)
EMBO J. 2019 Feb 1;38(3):. (PMID: 30530525)
Cell Rep. 2014 Feb 27;6(4):593-8. (PMID: 24529707)
Genome Biol. 2018 Oct 17;19(1):164. (PMID: 30333044)
RNA. 2011 May;17(5):843-54. (PMID: 21389146)
Hum Mutat. 2008 Jan;29(1):65-73. (PMID: 17694537)
J Cell Sci. 2016 Feb 1;129(3):461-7. (PMID: 26787741)
RNA. 2011 Dec;17(12):2108-18. (PMID: 22028362)
Nat Genet. 2016 Oct;48(10):1112-8. (PMID: 27618451)
Biochem Biophys Res Commun. 2013 May 24;435(1):16-20. (PMID: 23583196)
J Clin Invest. 2016 Aug 1;126(8):3058-62. (PMID: 27348585)
RNA. 2017 Mar;23(3):378-394. (PMID: 27940503)
J Biol Chem. 1998 Jun 19;273(25):15749-57. (PMID: 9624173)
RNA. 2017 Feb;23(2):189-201. (PMID: 27864472)
Cell Mol Life Sci. 2017 Oct;74(19):3509-3531. (PMID: 28503708)
Curr Genet. 2003 Jun;43(3):171-7. (PMID: 12695845)
J Biol Chem. 2017 Sep 15;292(37):15266-15276. (PMID: 28765281)
EMBO Mol Med. 2014 May 01;6(5):685-701. (PMID: 24705877)
PLoS One. 2017 Aug 25;12(8):e0183866. (PMID: 28841713)
Trends Genet. 2016 Jul;32(7):395-407. (PMID: 27185236)
PLoS One. 2017 Apr 3;12(4):e0174798. (PMID: 28369084)
Nucleic Acids Res. 2014 Aug;42(14):8928-38. (PMID: 25013167)
Wiley Interdiscip Rev RNA. 2016 Sep;7(5):661-82. (PMID: 27173476)
EMBO Rep. 2015 May;16(5):599-609. (PMID: 25807986)
Sci Rep. 2016 Nov 22;6:37311. (PMID: 27874031)
Cell. 1999 Feb 5;96(3):307-10. (PMID: 10025395)
Nucleic Acids Res. 2015 Jul 27;43(13):6528-44. (PMID: 26068473)
EMBO J. 2008 Mar 5;27(5):736-47. (PMID: 18256688)
Annu Rev Genomics Hum Genet. 2014;15:371-94. (PMID: 24773318)
Nat Med. 2014 Jun;20(6):596-8. (PMID: 24859531)
Nucleic Acids Res. 2017 Mar 17;45(5):2658-2674. (PMID: 28119417)
Int J Biochem Cell Biol. 2017 Oct;91(Pt B):168-175. (PMID: 28743674)
Nat Genet. 2007 Sep;39(9):1127-33. (PMID: 17704778)
Mol Cell Biol. 2011 Sep;31(17):3670-80. (PMID: 21730287)
Hum Mol Genet. 2019 Jun 1;28(11):1865-1871. (PMID: 30689859)
EMBO J. 2015 Jun 12;34(12):1606-8. (PMID: 25899816)
Bioessays. 2018 Jan;40(1):. (PMID: 29236296)
Acta Neuropathol. 2014 Sep;128(3):439-48. (PMID: 24740647)
Degener Neurol Neuromuscul Dis. 2016 May 13;6:37-48. (PMID: 30050367)
Mol Psychiatry. 2018 Aug;23(8):1773-1786. (PMID: 28948974)
Science. 2010 Sep 24;329(5999):1650-3. (PMID: 20724583)
Mutat Res Rev Mutat Res. 2014 Oct-Dec;762:52-64. (PMID: 25485595)
RNA. 2012 Feb;18(2):241-52. (PMID: 22190746)
Nature. 2007 Apr 19;446(7138):926-9. (PMID: 17361132)
Cold Spring Harb Mol Case Stud. 2018 Aug 1;4(4):. (PMID: 29798843)
Cell. 2016 Apr 7;165(2):382-95. (PMID: 27040500)
J Mol Cell Cardiol. 2012 Nov;53(5):725-33. (PMID: 22964610)
Cell. 2001 Nov 16;107(4):411-4. (PMID: 11719181)
Genome Res. 2013 Oct;23(10):1636-50. (PMID: 23766421)
Curr Genet. 2017 Dec;63(6):1007-1010. (PMID: 28536849)
Nat Struct Mol Biol. 2013 Aug;20(8):936-43. (PMID: 23832275)
Dev Cell. 2012 Jan 17;22(1):38-51. (PMID: 22209328)
Cell Mol Life Sci. 2015 May;72(10):1931-8. (PMID: 25651836)
J Virol. 1996 Sep;70(9):5884-92. (PMID: 8709208)
Nucleic Acids Res. 2018 Feb 16;46(3):1038-1051. (PMID: 29272451)
Nat Struct Mol Biol. 2006 May;13(5):462-4. (PMID: 16622410)
Semin Cell Dev Biol. 2018 Mar;75:78-87. (PMID: 28866327)
J Biol Chem. 2004 Jul 30;279(31):32170-80. (PMID: 15161914)
Nat Commun. 2015 Mar 26;6:6632. (PMID: 25808464)
BMC Mol Biol. 2016 Jul 29;17(1):17. (PMID: 27473591)
Nucleic Acids Res. 2016 Feb 29;44(4):1483-95. (PMID: 26773057)
Proc Natl Acad Sci U S A. 2012 May 22;109(21):8079-84. (PMID: 22562797)
RNA. 2010 Sep;16(9):1832-47. (PMID: 20675403)
Neuropsychiatr Dis Treat. 2016 Jul 22;12:1795-807. (PMID: 27524897)
Eur J Hum Genet. 2007 Nov;15(11):1156-62. (PMID: 17625509)
RNA. 2008 Sep;14(9):1950-8. (PMID: 18676617)
Neurochem Res. 2018 Jan;43(1):227-237. (PMID: 29081003)
Hum Genet. 2001 Oct;109(4):402-7. (PMID: 11702221)
PLoS Genet. 2014 Oct 23;10(10):e1004685. (PMID: 25340584)
RNA. 2015 May;21(5):887-97. (PMID: 25805855)
Am J Hum Genet. 2006 Aug;79(2):214-29. (PMID: 16826513)
J Biol Chem. 2013 Oct 4;288(40):28630-40. (PMID: 23928302)
Mol Cell. 2017 Jul 20;67(2):239-251.e6. (PMID: 28669802)
Hum Mutat. 2006 Oct;27(10):1024-9. (PMID: 16941470)
Biosystems. 2004 Nov;77(1-3):33-9. (PMID: 15527943)
BMC Genet. 2008 Dec 05;9:83. (PMID: 19061508)
BMC Mol Biol. 2001;2:3. (PMID: 11242562)
Hum Mol Genet. 2013 Dec 1;22(23):4673-87. (PMID: 23821644)
EMBO J. 1996 Nov 1;15(21):5965-75. (PMID: 8918474)
Genes Dev. 2006 Feb 1;20(3):355-67. (PMID: 16452507)
J Gen Virol. 2015 Nov;96(11):3411-3421. (PMID: 26382736)
Cell Rep. 2016 Aug 9;16(6):1588-1603. (PMID: 27475226)
Wiley Interdiscip Rev RNA. 2011 Nov-Dec;2(6):837-52. (PMID: 21976286)
Cell. 2010 Oct 29;143(3):379-89. (PMID: 21029861)
Genome Res. 2016 Dec;26(12):1639-1650. (PMID: 27646533)
J Biol Chem. 2018 Mar 23;293(12):4434-4444. (PMID: 29386352)
J Biol Chem. 2012 May 18;287(21):17765-17776. (PMID: 22457349)
RNA. 1995 Jul;1(5):453-65. (PMID: 7489507)
Genome Biol. 2004;5(10):R74. (PMID: 15461793)
PLoS Biol. 2008 Apr 29;6(4):e92. (PMID: 18447580)
EMBO J. 2007 Mar 21;26(6):1591-601. (PMID: 17318186)
Nature. 2011 Jun 15;474(7351):395-8. (PMID: 21677757)
RNA Biol. 2017 Dec 2;14(12):1660-1667. (PMID: 28745933)
Hum Mol Genet. 2003 Feb 1;12(3):217-25. (PMID: 12554676)
Cell. 2016 Jun 2;165(6):1319-1322. (PMID: 27259145)
EMBO J. 2015 Jun 12;34(12):1630-47. (PMID: 25770585)
Cell Biosci. 2017 May 19;7:26. (PMID: 28533900)
Nat Rev Neurosci. 2018 Dec;19(12):715-728. (PMID: 30410025)
Am J Physiol Heart Circ Physiol. 2013 Nov 1;305(9):H1397-404. (PMID: 23997099)
PLoS One. 2017 Jun 1;12(6):e0178700. (PMID: 28570605)
Nucleic Acids Res. 2001 Dec 15;29(24):5226-32. (PMID: 11812856)
Elife. 2019 Jan 15;8:. (PMID: 30644821)
Nature. 2004 Nov 4;432(7013):112-8. (PMID: 15525991)
RNA. 2014 Oct;20(10):1579-92. (PMID: 25147240)
Mol Psychiatry. 2012 Nov;17(11):1103-15. (PMID: 22182939)
Cell Rep. 2014 Oct 23;9(2):555-68. (PMID: 25310981)
Mol Cell Biol. 1997 May;17(5):2698-707. (PMID: 9111340)
Nat Biotechnol. 2016 Feb;34(2):164-6. (PMID: 26655495)
RNA. 2009 Sep;15(9):1652-60. (PMID: 19617316)
J Virol. 2018 May 14;92(11):. (PMID: 29514911)
Nat Struct Mol Biol. 2009 Jul;16(7):747-53. (PMID: 19503078)
EMBO J. 1998 Jun 15;17(12):3484-94. (PMID: 9628884)
Nat Rev Mol Cell Biol. 2012 Nov;13(11):700-12. (PMID: 23072888)
Elife. 2015 Jan 07;4:. (PMID: 25564732)
RNA Biol. 2012 Jan;9(1):22-6. (PMID: 22258150)
Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):189-92. (PMID: 12502788)
Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3357-62. (PMID: 23404710)
Hum Mutat. 2003 Jun;21(6):577-81. (PMID: 12754702)
Nat Genet. 2004 Oct;36(10):1073-8. (PMID: 15448691)
Genome Biol. 2017 Jun 14;18(1):108. (PMID: 28615073)
Genes Dev. 2009 Jan 1;23(1):54-66. (PMID: 19095803)
Nat Rev Mol Cell Biol. 2015 Nov;16(11):665-77. (PMID: 26397022)
Pharmacol Ther. 2012 Nov;136(2):227-66. (PMID: 22820013)
Cell Rep. 2014 Feb 27;6(4):748-64. (PMID: 24529710)
J Cell Sci. 2017 Sep 15;130(18):3009-3022. (PMID: 28743738)
EMBO Rep. 2009 Nov;10(11):1265-71. (PMID: 19798102)
Hum Genet. 2005 Nov;118(2):214-24. (PMID: 16133182)
RNA. 2004 Apr;10(4):691-703. (PMID: 15037778)
Mol Cell. 2011 Sep 16;43(6):950-61. (PMID: 21925383)
Clin Genet. 2010 Mar;77(3):280-6. (PMID: 20095988)
Curr Pharm Des. 2017;23(11):1598-1609. (PMID: 27875971)
Immunity. 1998 Feb;8(2):135-41. (PMID: 9491995)
FEMS Microbiol Rev. 2018 Mar 1;42(2):165-192. (PMID: 29281028)
RNA. 1998 Jul;4(7):801-15. (PMID: 9671053)
Elife. 2016 Jan 08;5:. (PMID: 26744779)
Neurosci Biobehav Rev. 2014 Oct;46 Pt 2:175-86. (PMID: 24239855)
Am J Hum Genet. 2018 Jun 7;102(6):1126-1142. (PMID: 29805043)
Hum Mol Genet. 2015 Oct 15;24(20):5901-14. (PMID: 26246499)
Cell Mol Life Sci. 2015 Dec;72(23):4523-44. (PMID: 26283621)
EMBO J. 1997 Feb 17;16(4):826-33. (PMID: 9049311)
معلومات مُعتمدة: R35 GM133433 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: RNA processing; mRNA surveillance; nonsense-mediated RNA decay; translation
المشرفين على المادة: 0 (Codon, Nonsense)
تواريخ الأحداث: Date Created: 20190731 Date Completed: 20210101 Latest Revision: 20231130
رمز التحديث: 20231130
مُعرف محوري في PubMed: PMC10685860
DOI: 10.1002/wrna.1560
PMID: 31359616
قاعدة البيانات: MEDLINE
الوصف
تدمد:1757-7012
DOI:10.1002/wrna.1560