دورية أكاديمية
Interbase FRET in RNA: from A to Z.
| العنوان: | Interbase FRET in RNA: from A to Z. |
|---|---|
| المؤلفون: | Füchtbauer AF; Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden., Wranne MS; Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden., Bood M; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg SE-412 96, Sweden.; Medicinal Chemistry, Research and Early Development Cardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden., Weis E; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg SE-412 96, Sweden.; Medicinal Chemistry, Research and Early Development Cardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden., Pfeiffer P; Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden., Nilsson JR; Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden., Dahlén A; Medicinal Chemistry, Research and Early Development Cardiovascular, Renal and Metabolism, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden., Grøtli M; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg SE-412 96, Sweden., Wilhelmsson LM; Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg SE-412 96, Sweden. |
| المصدر: | Nucleic acids research [Nucleic Acids Res] 2019 Nov 04; Vol. 47 (19), pp. 9990-9997. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: 1992- : Oxford : Oxford University Press Original Publication: London, Information Retrieval ltd. |
| مواضيع طبية MeSH: | Nucleic Acid Conformation*, DNA/*chemistry , Fluorescence Resonance Energy Transfer/*methods , RNA/*chemistry, Base Pairing ; DNA/genetics ; Models, Molecular ; RNA/isolation & purification |
| مستخلص: | Interbase FRET can reveal highly detailed information about distance, orientation and dynamics in nucleic acids, complementing the existing structure and dynamics techniques. We here report the first RNA base analogue FRET pair, consisting of the donor tCO and the non-emissive acceptor tCnitro. The acceptor ribonucleoside is here synthesised and incorporated into RNA for the first time. This FRET pair accurately reports the average structure of A-form RNA, and its utility for probing RNA structural changes is demonstrated by monitoring the transition from A- to Z-form RNA. Finally, the measured FRET data were compared with theoretical FRET patterns obtained from two previously reported Z-RNA PDB structures, to shed new light on this elusive RNA conformation. (© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.) |
| References: | Angew Chem Int Ed Engl. 2008;47(33):6184-8. (PMID: 18618555) J Am Chem Soc. 2009 Dec 9;131(48):17605-14. (PMID: 19908830) Science. 1999 Jun 11;284(5421):1841-5. (PMID: 10364558) J Am Chem Soc. 2011 Sep 28;133(38):14912-5. (PMID: 21866967) Sci Rep. 2017 May 24;7(1):2393. (PMID: 28539582) J Mol Biol. 2001 Oct 12;313(1):229-37. (PMID: 11601858) J Am Chem Soc. 2009 Apr 1;131(12):4288-93. (PMID: 19317504) Nucleic Acids Res. 2003 Sep 1;31(17):5108-21. (PMID: 12930962) J Am Chem Soc. 2010 Jun 2;132(21):7231-3. (PMID: 20459096) Nucleic Acids Res. 2008 Jan;36(1):157-67. (PMID: 18003656) Nucleic Acids Res. 2016 Jun 20;44(11):e101. (PMID: 26896804) Nucleic Acids Res. 2009 Jul;37(Web Server issue):W240-6. (PMID: 19474339) Nature. 1984 Oct 11-17;311(5986):584-6. (PMID: 6482970) Nat Biotechnol. 2001 Feb;19(2):167-9. (PMID: 11175733) Nucleic Acids Res. 2015 Dec 15;43(22):e149. (PMID: 26202965) Nucleic Acids Res. 1984 Jun 11;12(11):4539-57. (PMID: 6547529) Chemistry. 2017 Jun 1;23(31):7607-7613. (PMID: 28411372) J Am Chem Soc. 2015 Nov 25;137(46):14602-5. (PMID: 26523462) J Mol Biol. 1990 Jan 5;211(1):147-60. (PMID: 2153833) Chem Sci. 2018 Mar 1;9(14):3494-3502. (PMID: 29780479) Nucleic Acids Res. 2013 Jan 7;41(1):e18. (PMID: 22977181) Nature. 1979 Dec 13;282(5740):680-6. (PMID: 514347) J Phys Chem B. 2017 Sep 7;121(35):8211-8241. (PMID: 28709377) J Am Chem Soc. 2017 Jul 12;139(27):9271-9280. (PMID: 28613885) Nature. 2012 Feb 15;482(7385):322-30. (PMID: 22337051) Nat Commun. 2014 Oct 29;5:5127. (PMID: 25351101) Structure. 2007 Apr;15(4):395-404. (PMID: 17437712) Nucleic Acids Res. 2004 Aug 03;32(13):4044-54. (PMID: 15292450) J Phys Chem B. 2010 Jan 21;114(2):1050-6. (PMID: 20039634) Org Lett. 2011 Feb 18;13(4):676-9. (PMID: 21214222) |
| المشرفين على المادة: | 63231-63-0 (RNA) 9007-49-2 (DNA) |
| تواريخ الأحداث: | Date Created: 20190924 Date Completed: 20191206 Latest Revision: 20200108 |
| رمز التحديث: | 20240628 |
| مُعرف محوري في PubMed: | PMC6821158 |
| DOI: | 10.1093/nar/gkz812 |
| PMID: | 31544922 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1362-4962 |
|---|---|
| DOI: | 10.1093/nar/gkz812 |