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Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019.

التفاصيل البيبلوغرافية
العنوان: Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019.
المؤلفون: Sakowski E; Department of Environmental Health and Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Uritskiy G; Department of Biology, Johns Hopkins University, Baltimore, Maryland, USA., Cooper R; Molecular and Comparative Pathobiology, Johns Hopkins University, Baltimore, Maryland, USA., Gomes M; Department of Earth and Planetary Sciences, Johns Hopkins University, Baltimore, Maryland, USA., McLaren MR; Department of Population Health and Pathobiology, North Carolina State University, Raleigh, North Carolina, USA., Meisel JS; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Mickol RL; American Society for Engineering Education, Washington, DC, USA., Mintz CD; Department of Anesthesiology and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA., Mongodin EF; University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, Maryland, USA., Pop M; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Rahman MA; Department of Computer Science, George Mason University, Fairfax, Virginia, USA., Sanchez A; Department of Ecology and Evolutionary Biology, Yale University, New Haven Connecticut, USA., Timp W; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Vela JD; Department of Civil and Environmental Engineering, Howard University, Washington, DC, USA., Wolz CM; Center for Conservation Genomics, Smithsonian National Zoological Park & Conservation Biology Institute, Washington, DC, USA., Zackular JP; Department of Pathology and Laboratory Medicine, University of Pennsylvania and Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA., Chopyk J; School of Public Health, University of Maryland, College Park, Maryland, USA., Commichaux S; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Davis M; Department of Environmental Health and Engineering, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA., Dluzen D; Department of Biology, Morgan State University, Baltimore, Maryland, USA., Ganesan SM; National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, USA., Haruna M; Department of Biology, Morgan State University, Baltimore, Maryland, USA., Nasko D; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Regan MJ; University of Maryland School of Nursing, Baltimore, Maryland, USA., Sarria S; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Shah N; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Stacy B; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., Taylor D; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA., DiRuggiero J; Department of Biology, Johns Hopkins University, Baltimore, Maryland, USA jdiruggiero@jhu.edu sprehei1@jhu.edu., Preheim SP; Department of Environmental Health and Engineering, Johns Hopkins University, Baltimore, Maryland, USA jdiruggiero@jhu.edu sprehei1@jhu.edu.
المصدر: MSystems [mSystems] 2019 Oct 08; Vol. 4 (5). Date of Electronic Publication: 2019 Oct 08.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Electronic Cited Medium: Print ISSN: 2379-5077 (Print) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Washington, DC : American Society for Microbiology, [2016]-
مستخلص: Accurate predictions across multiple fields of microbiome research have far-reaching benefits to society, but there are few widely accepted quantitative tools to make accurate predictions about microbial communities and their functions. More discussion is needed about the current state of microbiome analysis and the tools required to overcome the hurdles preventing development and implementation of predictive analyses. We summarize the ideas generated by participants of the Mid-Atlantic Microbiome Meet-up in January 2019. While it was clear from the presentations that most fields have advanced beyond simple associative and descriptive analyses, most fields lack essential elements needed for the development and application of accurate microbiome predictions. Participants stressed the need for standardization, reproducibility, and accessibility of quantitative tools as key to advancing predictions in microbiome analysis. We highlight hurdles that participants identified and propose directions for future efforts that will advance the use of prediction in microbiome research.
(Copyright © 2019 Sakowski et al.)
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فهرسة مساهمة: Keywords: bioinformatics; conceptual models; machine learning; metagenomics; microbiome; prediction; quantitative models
تواريخ الأحداث: Date Created: 20191010 Latest Revision: 20231104
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC6787564
DOI: 10.1128/mSystems.00392-19
PMID: 31594828
قاعدة البيانات: MEDLINE
الوصف
تدمد:2379-5077
DOI:10.1128/mSystems.00392-19