دورية أكاديمية
Evolutionary history of mountain voles of the subgenus Aschizomys (Cricetidae, Rodentia), inferred from mitochondrial and nuclear markers.
العنوان: | Evolutionary history of mountain voles of the subgenus Aschizomys (Cricetidae, Rodentia), inferred from mitochondrial and nuclear markers. |
---|---|
المؤلفون: | Bodrov SY; Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia., Vasiljeva VK; Institute for Biological Problems of Cryolithozone, Yakutsk, Sakha Republic (Yakutia), Russia., Okhlopkov IM; Institute for Biological Problems of Cryolithozone, Yakutsk, Sakha Republic (Yakutia), Russia., Mamayev NV; Institute for Biological Problems of Cryolithozone, Yakutsk, Sakha Republic (Yakutia), Russia., Zakharov ES; Institute for Biological Problems of Cryolithozone, Yakutsk, Sakha Republic (Yakutia), Russia., Oleinikov AY; Institute of Water and Ecological Problems, Khabarovsk, Russia., Genelt-Yanovskiy EA; Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia., Abramson NI; Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia.; Saint-Petersburg Scientific Center RAS, Saint Petersburg, Russia. |
المصدر: | Integrative zoology [Integr Zool] 2020 May; Vol. 15 (3), pp. 187-201. |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Wiley Publishing Asia Pty Ltd Country of Publication: Australia NLM ID: 101492420 Publication Model: Print Cited Medium: Internet ISSN: 1749-4877 (Electronic) Linking ISSN: 17494869 NLM ISO Abbreviation: Integr Zool Subsets: MEDLINE |
أسماء مطبوعة: | Publication: Original Publication: 2006- |
مواضيع طبية MeSH: | Biological Evolution*, Arvicolinae/*genetics , DNA/*analysis, Animals ; Cell Nucleus/genetics ; DNA, Mitochondrial/analysis ; Genetic Markers ; Russia |
مستخلص: | In this study, we present an assessment of the evolutionary history and phylogenetic relationships of Asian mountain voles of the subgenus Aschizomys, genus Alticola, based on extensive sampling and phylogenetic analyses of data from mitochondrial and nuclear markers. Two species of this subgenus are widespread in the mountain areas of north-eastern Asia. However, both their distribution and taxonomic borders remained questionable for more than 100 years. Our study showed discordance in the phylogenetic patterns between nuclear and mtDNA markers. We found that mtDNA in A. lemminus is paraphyletic relative to A. macrotis, but nuclear markers demonstrated reciprocal monophyly. According to species distribution modeling, ranges of A. macrotis and A. lemminus experienced a secondary contact during the Last Glacial Maximum (approximately 22 kyr BP), and thus a hybridization event seems plausible during that period. Species tree analyses recovered a sister group relationship between the two species of the Aschizomys subgenus, with an estimated divergence date of around 0.8 Ma. Our results provided good support for currently recognized subspecies within both A. macrotis and A. lemminus based on mitochondrial and nuclear datasets. A new, yet undescribed form, supposedly of a subspecific status within A. lemminus, was found in the Bureinskiy Range in the Khabarovsk area. This finding expands the current species distribution range further to the southeast. (© 2019 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.) |
References: | Abramson NI, Lebedev VS, Tesakov AS, Bannikova AA (2009). Supraspecies relationships in the subfamily Arvicolinae (Rodentia, Cricetidae): An unexpected result of nuclear gene analysis. Molecular Biology 43, 834-46. Bannikova AA, Sighazeva AM, Malikov VG, Golenishchev FN, Dzuev RI (2013). Genetic diversity of Chionomys genus (Mammalia, arvicolinae) and comparative phylogeography of snow voles. Russian Journal of Genetics 49, 561-75. Binney H, Edwards M, Macias-Fauria M et al. (2017). Vegetation of Eurasia from the last glacial maximum to present: Key biogeographic patterns. Quaternary Science Reviews 157, 80-97. Bodrov SY, Kostygov AY, Rudneva LV, Abramson NI (2016). Revision of the taxonomic position of the Olkhon mountain vole (Rodentia, cricetidae). Biology Bulletin of the Russian Academy of Science 43, 136-45. Bolshakov VN, Gileva EA, Bykova GV (1985). Chromosome variation in the Asian mountain vole, Alticola macrotis Radde, 1861 (Rodentia, Cricetidae). The Annals of Zoology 23, 53-69. Bykova GV, Vasilyeva IA, Gileva EA (1978). Chromosomal and morphological diversity in 2 populations of Asian mountain vole, Alticola lemminus Miller (Rodentia, Cricetidae). Experientia 34, 1146-8. Carleton MD, Musser GG (2005). Order Rodentia. In: Wilson DE, Reeder DM, eds. Mammal Species of the World, 3rd edn. Johns Hopkins University Press, Baltimore, MD. Delvaux D, Moeys R, Stapel G et al. (1997). Paleostress reconstructions and geodynamics of the Baikal region, central Asia, Part 2. Cenozoic rifting. Tectonophysics 282, 1-38. Drummond AJ, Rambaut A (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7, 214. Drummond AJ, Ho SYW, Phillips MJ, Rambaut A (2006). Relaxed phylogenetics and dating with confidence. PLoS Biology 4, e88. Drummond AJ, Suchard MA, Xie D, Rambaut A (2012). Bayesian Phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29, 1969-73. Edgar RC (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792-7. Evans B, Pin L, Melnick D, Wright S (2010). Sex-linked inheritance in macaque monkeys: Implications for effective population size and dispersal to Sulawesi. Genetics 185, 923-37. Gent PR, Danabasoglu G, Donner LJ et al. (2011). The community climate system model version 4. Journal of Climate 24, 4973-91. Gileva EA, Rybnikov DE, Miroshnichenko GP (1989). [DNA-DNA hybridization and phylogenetic relationships in two genera of voles, Alticola, and Clethrionomys (Microtinae Rodentia)]. Doklady Akademii Nauk SSSR 311, 477-80. [In Russian.]. Heled J, Drummond AJ (2010). Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 27, 570-80. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A (2005). Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25, 1965-78. Ho SYW, Phillips MJ (2009). Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Systematic Biology 58, 367-80. Jobb G, von Haeseler A, Strimmer K (2004). TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4, 18. Joly S (2012). JML: Testing hybridization from species trees. Molecular Ecology Resources 12, 179-84. Joly S, McLenachan PA, Lockhart PJ (2009). A statistical approach for distinguishing hybridization and incomplete lineage sorting. The American Naturalist 174, E54-70. Klymus KE, Humfeld SC, Marshall VT, Cannatella D, Gerhardt HC (2010). Molecular patterns of differentiation in canyon treefrogs (Hyla arenicolor): Evidence for introgressive hybridization with the Arizona treefrog (H. wrightorum) and correlations with advertisement call differences. Journal of Evolutionary Biology 23, 1425-35. Kohli BA, Speer KA, Kilpatrick CW, Batsaikhan N, Damdinbaza D, Cook JA (2014). Multilocus systematics and non-punctuated evolution of Holarctic Myodini (Rodentia: arvicolinae). Molecular Phylogenetics and Evolution 76, 18-29. Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018). Mega x: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35, 1547-9. Lampert KP, Rand AS, Mueller UG, Ryan MJ (2003). Fine-scale genetic pattern and evidence for sex-biased dispersal in the tungara frog, Physalaemus pustulosus. Molecular Ecology 12, 3325-34. Lebedev VS, Bannikova AA, Tesakov AS, Abramson NI (2007). Molecular phylogeny of the genus Alticola (Cricetidae, rodentia) as inferred from the sequence of the cytochrome b gene. Zoologica Scripta 36, 547-63. Leigh JW, Bryant D (2015). PopART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution 6, 1110-6. Librado P, Rozas J (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451-2. Lis JT (1980). Fractionation of DNA fragments by polyethylene glycol induced precipitation. Methods in Enzymology 65, 347-53. Maddison WP (1997). Gene trees in species trees. Systematic Biology 46, 523-36. Miller SA, Dykes DD, Polesky HF (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16, 1215. Ognev SI. (1950). Zveri SSSR i prilegayushchikh stran. 7: Gryzuny (Animals of the USSR and Adjacent Countries 7: Rodents). Izd. AN SSSR, Moscow. Ohdachi S, Dokuchaev NE, Hasegawa M, Masuda R (2001). Intraspecific phylogeny and geographical variation of six species of northeastern Asiatic Sorex shrews based on the mitochondrial cytochrome b sequences. Molecular Ecology 10, 2199-213. Otto-Bliesner BL, Marshall SJ, Overpeck JT, Miller GH, Hu A (2006). Simulating Arctic climate warmth and icefield retreat in the last interglaciation. Science 311, 1751-3. Phillips SJ, Anderson RP, Schapire RE (2006). Maximum entropy modeling of species geographic distributions. Ecological Modelling 190, 231-59. Repenning CA, Feifar O, Heinrich WD (1990). Arvicolid rodent biochronology of the Northern Hemisphere. In: Fejfar O, Heinrich WD, eds. International Symposium: Evolution, Phylogeny, and Biostratigraphy of Arvicolids (Rodentia, Mammalia). Geological Survey, Prague, pp. 385-418. Ronquist F, Huelsenbeck JP (2003a). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-4. Serdyuk NV, Tesakov AS (2007). New form of rhizodont voles (Rodentia, arvicolinae, clethrionomyini) from Pleistocene of Central Altai (Russia). Russian Journal of Theriology 2, 79-83. Shaw KL (2002). Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: What mtDNA reveals and conceals about modes of speciation in Hawaiian crickets. Proceedings of the National Academy of Sciences 99, 16122-7. Shenbrot GI, Krasnov BR (2005). Atlas of the Geographic Distribution of the Arvicoline Rodents of the World (Rodentia, Muridae: Arvicolinae). Pensoft, Sofia. Steppan SJ, Schenk JJ (2017). Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates. PLoS ONE 12, e0183070. Thompson JD, Higgins DG, Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-80. Tupikova NV, Shvedov AP (1961). On the systematic position, distribution and ecology of Altai mountain vole. Bulleten' Moskovskogo obschestva ispytatelei prirody, Otdelenie Biologii 66, 5-14. Vasil'eva, IA (1999). Epigenetic divergence of Asian high-mountain voles of the subgenus Aschizomys from southern and north-eastern Siberia. Folia Zoologica 48 (Suppl. 1), 105-14. Vasil'eva, IA, Vasil'ev, AG (1984). An experience of phenetic study of taxonomic relationships between Transbaikal and Altai forms of large-eared mountain vole (Alticola macrotis Radde, 1861). Populyatzionnaya ekologiya I morphologiya mlekopitayuschikh. Sverdlovsk, pp. 53-70. |
فهرسة مساهمة: | Keywords: Aschizomys; Asian mountain voles; phylogeny; species distribution modeling; species tree; taxonomy |
المشرفين على المادة: | 0 (DNA, Mitochondrial) 0 (Genetic Markers) 9007-49-2 (DNA) |
تواريخ الأحداث: | Date Created: 20191022 Date Completed: 20200909 Latest Revision: 20200909 |
رمز التحديث: | 20240628 |
DOI: | 10.1111/1749-4877.12415 |
PMID: | 31631516 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1749-4877 |
---|---|
DOI: | 10.1111/1749-4877.12415 |