دورية أكاديمية

Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition.

التفاصيل البيبلوغرافية
العنوان: Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition.
المؤلفون: van Grinsven S; Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands., Sinninghe Damsté JS; Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands.; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands., Abdala Asbun A; Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands., Engelmann JC; Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands., Harrison J; Washington State University Vancouver, School of the Environment, Vancouver, WA, 98686, USA., Villanueva L; Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands.
المصدر: Environmental microbiology [Environ Microbiol] 2020 Feb; Vol. 22 (2), pp. 766-782. Date of Electronic Publication: 2020 Jan 01.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Blackwell Science Country of Publication: England NLM ID: 100883692 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1462-2920 (Electronic) Linking ISSN: 14622912 NLM ISO Abbreviation: Environ Microbiol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Oxford : Blackwell Science, 1999-
مواضيع طبية MeSH: Lakes/*microbiology , Methane/*metabolism , Methylococcaceae/*metabolism , Nitrates/*analysis , Sulfates/*analysis, Anaerobiosis/physiology ; Denitrification/genetics ; Methylococcaceae/growth & development ; Nitrites/analysis ; Oxidation-Reduction ; Oxygen/metabolism ; Washington
مستخلص: Methanotrophic bacteria play a key role in limiting methane emissions from lakes. It is generally assumed that methanotrophic bacteria are mostly active at the oxic-anoxic transition zone in stratified lakes, where they use oxygen to oxidize methane. Here, we describe a methanotroph of the genera Methylobacter that is performing high-rate (up to 72 μM day -1 ) methane oxidation in the anoxic hypolimnion of the temperate Lacamas Lake (Washington, USA), stimulated by both nitrate and sulfate addition. Oxic and anoxic incubations both showed active methane oxidation by a Methylobacter species, with anoxic rates being threefold higher. In anoxic incubations, Methylobacter cell numbers increased almost two orders of magnitude within 3 days, suggesting that this specific Methylobacter species is a facultative anaerobe with a rapid response capability. Genomic analysis revealed adaptations to oxygen-limitation as well as pathways for mixed-acid fermentation and H 2 production. The denitrification pathway was incomplete, lacking the genes narG/napA and nosZ, allowing only for methane oxidation coupled to nitrite-reduction. Our data suggest that Methylobacter can be an important driver of the conversion of methane in oxygen-limited lake systems and potentially use alternative electron acceptors or fermentation to remain active under oxygen-depleted conditions.
(© 2019 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.)
References: J Bacteriol. 2017 Jun 19;199(22):e00328-17. (PMID: 28630125)
Nature. 2000 Oct 5;407(6804):623-6. (PMID: 11034209)
mBio. 2018 Nov 6;9(6):. (PMID: 30401770)
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6. (PMID: 23193283)
Appl Environ Microbiol. 2011 Jul;77(13):4429-36. (PMID: 21551281)
Bioinformatics. 2014 Mar 1;30(5):614-20. (PMID: 24142950)
Bioinformatics. 2013 Apr 15;29(8):1072-5. (PMID: 23422339)
Genome Res. 2015 Jul;25(7):1043-55. (PMID: 25977477)
Microbes Environ. 2008;23(3):192-200. (PMID: 21558708)
Science. 2011 Jan 7;331(6013):50. (PMID: 21212349)
Methods Enzymol. 2013;531:333-52. (PMID: 24060129)
Bioscience. 2016 Nov 1;66(11):949-964. (PMID: 32801383)
Appl Environ Microbiol. 1995 Apr;61(4):1563-70. (PMID: 16535004)
Environ Microbiol. 2007 Jan;9(1):187-96. (PMID: 17227423)
ISME J. 2015 May;9(5):1119-29. (PMID: 25333464)
Environ Microbiol Rep. 2011 Feb;3(1):91-100. (PMID: 23761236)
Appl Environ Microbiol. 1999 Nov;65(11):5066-74. (PMID: 10543824)
Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2363-7. (PMID: 16452171)
Nucleic Acids Res. 2004 Feb 25;32(4):1363-71. (PMID: 14985472)
Environ Sci Technol. 2015 Jan 6;49(1):277-83. (PMID: 25412274)
ISME J. 2012 Aug;6(8):1621-4. (PMID: 22402401)
Bioinformatics. 2014 Aug 1;30(15):2114-20. (PMID: 24695404)
Nat Commun. 2018 Nov 27;9(1):4999. (PMID: 30479325)
Appl Environ Microbiol. 2005 Dec;71(12):8925-8. (PMID: 16332891)
FEMS Microbiol Lett. 1995 Oct 15;132(3):203-8. (PMID: 7590173)
PLoS One. 2015 Jul 20;10(7):e0132574. (PMID: 26193458)
PeerJ. 2015 Feb 24;3:e801. (PMID: 25755930)
Nature. 2010 Mar 25;464(7288):543-8. (PMID: 20336137)
ISME J. 2017 Sep;11(9):2124-2140. (PMID: 28585934)
Front Microbiol. 2015 Dec 15;6:1346. (PMID: 26696968)
Sci Total Environ. 2019 Feb 10;650(Pt 2):2674-2684. (PMID: 30373050)
J Inorg Biochem. 2012 Jun;111:10-7. (PMID: 22484247)
Appl Environ Microbiol. 2007 Jun;73(11):3556-65. (PMID: 17416684)
Bioinformatics. 2010 Oct 1;26(19):2460-1. (PMID: 20709691)
Annu Rev Microbiol. 2009;63:311-34. (PMID: 19575572)
Methods Enzymol. 2011;486:223-51. (PMID: 21185438)
Environ Microbiol. 2015 Sep;17(9):3219-32. (PMID: 25580993)
BMC Genomics. 2008 Feb 08;9:75. (PMID: 18261238)
Front Microbiol. 2018 Aug 27;9:1982. (PMID: 30210468)
Genome Res. 2017 May;27(5):824-834. (PMID: 28298430)
Mol Biol Evol. 2013 Dec;30(12):2725-9. (PMID: 24132122)
Int J Syst Evol Microbiol. 2011 Jul;61(Pt 7):1651-1655. (PMID: 20709913)
J Microbiol Methods. 2012 Jan;88(1):147-54. (PMID: 22101311)
Bioinformatics. 2015 Jun 15;31(12):i35-43. (PMID: 26072503)
Science. 2016 Feb 12;351(6274):703-7. (PMID: 26912857)
Adv Appl Microbiol. 2008;63:183-229. (PMID: 18395128)
FEMS Microbiol Ecol. 2011 Sep;77(3):533-45. (PMID: 21595728)
FEMS Microbiol Ecol. 2011 Apr;76(1):26-38. (PMID: 21244447)
Bioinformatics. 2009 Sep 1;25(17):2271-8. (PMID: 19561336)
Front Microbiol. 2015 Oct 06;6:1072. (PMID: 26500622)
Front Genet. 2020 Nov 20;11:489357. (PMID: 33329686)
PeerJ. 2014 Jan 09;2:e243. (PMID: 24482762)
Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):106-111. (PMID: 21335496)
Nat Methods. 2010 May;7(5):335-6. (PMID: 20383131)
Nat Commun. 2013;4:2785. (PMID: 24302011)
Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):12792-12796. (PMID: 27791118)
Chem Rev. 2007 Feb;107(2):486-513. (PMID: 17261072)
Nature. 2006 Apr 13;440(7086):918-21. (PMID: 16612380)
J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712)
Sci Total Environ. 2017 Dec 31;607-608:23-31. (PMID: 28686892)
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147)
Syst Biol. 2010 May;59(3):307-21. (PMID: 20525638)
J Bacteriol. 2011 Nov;193(22):6418-9. (PMID: 21725021)
PeerJ. 2017 Oct 20;5:e3945. (PMID: 29062611)
PeerJ. 2015 Aug 27;3:e1165. (PMID: 26336640)
المشرفين على المادة: 0 (Nitrates)
0 (Nitrites)
0 (Sulfates)
OP0UW79H66 (Methane)
S88TT14065 (Oxygen)
تواريخ الأحداث: Date Created: 20191210 Date Completed: 20200907 Latest Revision: 20240725
رمز التحديث: 20240726
مُعرف محوري في PubMed: PMC7027835
DOI: 10.1111/1462-2920.14886
PMID: 31814267
قاعدة البيانات: MEDLINE
الوصف
تدمد:1462-2920
DOI:10.1111/1462-2920.14886