دورية أكاديمية
Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements.
| العنوان: | Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements. |
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| المؤلفون: | Wood PL Jr; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. Electronic address: perryleewoodjr@gmail.com., Guo X; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA; Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. Electronic address: guoxg@cib.ac.cn., Travers SL; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. Electronic address: stravers@ku.edu., Su YC; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA; Department of Biomedical Science and Environmental Biology, Kaohsiung Medical University, Kaohsiung City 80708, Taiwan. Electronic address: ycsu527@kmu.edu.tw., Olson KV; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. Electronic address: olson@ku.edu., Bauer AM; Department of Biology and Center for Biodiversity and Ecosystem Stewardship , 800 Lancaster Avenue, Villanova University, Villanova, PA 19085, USA. Electronic address: aaron.bauer@villanova.edu., Grismer LL; Herpetology Laboratory, Department of Biology, La Sierra University, Riverside, CA 92515, USA. Electronic address: lgrismer@lasierra.edu., Siler CD; Department of Biology and Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, Norman, OK 73072-7029, USA. Electronic address: camsiler@ou.edu., Moyle RG; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. Electronic address: moyle@ku.edu., Andersen MJ; Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM 87131, USA. Electronic address: mjandersen@unm.edu., Brown RM; Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, USA. Electronic address: rafe@ku.edu. |
| المصدر: | Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2020 May; Vol. 146, pp. 106731. Date of Electronic Publication: 2020 Jan 03. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S. |
| اللغة: | English |
| بيانات الدورية: | Publisher: Academic Press Country of Publication: United States NLM ID: 9304400 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9513 (Electronic) Linking ISSN: 10557903 NLM ISO Abbreviation: Mol Phylogenet Evol Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: San Diego, CA ; Orlando, FL : Academic Press Original Publication: San Diego : Academic Press, c1992- |
| مواضيع طبية MeSH: | Lizards/*classification, Animals ; Australasia ; Base Sequence ; Conserved Sequence ; Genomics ; Indonesia ; Lizards/genetics ; Phylogeny ; Sequence Analysis, DNA |
| مستخلص: | Recent phylogenetic studies of gekkonid lizards have revealed unexpected, widespread paraphyly and polyphyly among genera, unclear generic boundaries, and a tendency towards the nesting of taxa exhibiting specialized, apomorphic morphologies within geographically widespread "generalist" clades. This is especially true in Australasia, where monophyly of Gekko proper has been questioned with respect to phenotypically ornate flap-legged geckos of the genus Luperosaurus, the Philippine false geckos of the genus Pseudogekko, and even the elaborately "derived" parachute geckos of the genus Ptychozoon. Here we employ sequence capture targeting 5060 ultraconserved elements (UCEs) to infer phylogenomic relationships among 42 representative ingroup gekkonine lizard taxa. We analyze multiple datasets of varying degrees of completeness (10, 50, 75, 95, and 100 percent complete with 4715, 4051, 3376, 2366, and 772 UCEs, respectively) using concatenated maximum likelihood and multispecies coalescent methods. Our sampling scheme addresses four persistent systematic questions in this group: (1) Are Luperosaurus and Ptychozoon monophyletic, and are any of these named species truly nested within Gekko? (2) Are prior phylogenetic estimates of Sulawesi's L. iskandari as the sister taxon to Melanesian G. vittatus supported by our genome-scale dataset? (3) Is the high-elevation L. gulat of Palawan Island correctly placed within Gekko? (4) And, finally, where do the enigmatic taxa P. rhacophorus and L. browni fall in a higher-level gekkonid phylogeny? We resolve these issues; confirm with strong support some previously inferred findings (placement of Ptychozoon taxa within Gekko; the sister taxon relationship between L. iskandari and G. vittatus); resolve the systematic position of unplaced taxa (L. gulat, and L. browni); and transfer L. iskandari, L. gulat, L. browni, and all members of the genus Ptychozoon to the genus Gekko. Our unexpected and novel systematic inference of the placement of Ptychozoon rhacophorus suggests that this species is not grouped with Ptychozoon or even Luperosaurus (as previously expected) but may, in fact, be most closely related to several Indochinese species of Gekko. With our resolved and strongly supported phylogeny, we present a new classification emphasizing the most inclusive, original generic name (Gekko) for these ~60 taxa, arranged into seven subgenera. (Copyright © 2020 Elsevier Inc. All rights reserved.) |
| التعليقات: | Erratum in: Mol Phylogenet Evol. 2021 Nov;164:107255. (PMID: 34294518) |
| فهرسة مساهمة: | Keywords: Luperosaurus; Phylogenomics; Ptychozoon; Species tree; Subgenera; Taxonomic vandalism; Ultraconserved elements |
| تواريخ الأحداث: | Date Created: 20200107 Date Completed: 20200806 Latest Revision: 20210723 |
| رمز التحديث: | 20240628 |
| DOI: | 10.1016/j.ympev.2020.106731 |
| PMID: | 31904508 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1095-9513 |
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| DOI: | 10.1016/j.ympev.2020.106731 |