دورية أكاديمية
أعرض في EDS

Uncovering Phenotypic Diversity and DArTseq Marker Loci Associated with Antioxidant Activity in Common Bean.

التفاصيل البيبلوغرافية
العنوان: Uncovering Phenotypic Diversity and DArTseq Marker Loci Associated with Antioxidant Activity in Common Bean.
المؤلفون: Nadeem MA; Department of Field Crops, Faculty of Agricultural and Natural Science, Bolu Abant Izzet Baysal University, Bolu 14030, Turkey., Gündoğdu M; Department of Horticulture, Faculty of Agriculture and Natural Sciences, Bolu Abant Izzet Baysal University, Bolu 14000, Turkey., Ercişli S; Department of Horticulture, Faculty of Agriculture, Ataturk University, Erzurum 25240, Turkey., Karaköy T; Faculty of Agricultural Sciences and Technologies, Sivas University of Science and Technology, Sivas 58140, Turkey., Saracoğlu O; Department of Horticulture, Faculty of Agricultural, Tokat Gaziosmanpasa University, Tokat 60010, Turkey., Habyarimana E; CREA Research Center for Cereal and Industrial Crops, 40128 Bologna, Italy., Lin X; School of life Sciences, The Chinese university of Hong Kong, Shatin, 999077, N.T., Hong Kong, China., Hatipoğlu R; Department of Field Crops, Faculty of Agricultural, University of Cukurova, Adana 1000, Turkey., Nawaz MA; Education and Scientific Center of Nanotechnology, Far Eastern Federal University, Vladivostok 690950, Russian., Sameeullah M; Department of Field Crops, Faculty of Agricultural and Natural Science, Bolu Abant Izzet Baysal University, Bolu 14030, Turkey., Ahmad F; Jamil-ur-Rahman Center for Genome Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan., Jung BM; Division of Food and Nutrition, Chonnam National University, Gwangju 61186, Korea., Chung G; Department of Biotechnology, Chonnam National University, Chonnam 59626, Korea., Baloch FS; Department of Field Crops, Faculty of Agricultural and Natural Science, Bolu Abant Izzet Baysal University, Bolu 14030, Turkey.
المصدر: Genes [Genes (Basel)] 2019 Dec 28; Vol. 11 (1). Date of Electronic Publication: 2019 Dec 28.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel : MDPI
مواضيع طبية MeSH: Quantitative Trait Loci*, Antioxidants/*analysis , Chromosome Mapping/*methods , Phaseolus/*physiology, Linkage Disequilibrium ; Phaseolus/genetics ; Phaseolus/metabolism ; Phenotype ; Plant Breeding ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Seeds/genetics ; Seeds/growth & development ; Seeds/metabolism
مستخلص: Antioxidants play an important role in animal and plant life owing to their involvement in complex metabolic and signaling mechanisms, hence uncovering the genetic basis associated with antioxidant activity is very important for the development of improved varieties. Here, a total of 182 common bean ( Phaseolus vulgaris ) landraces and six commercial cultivars collected from 19 provinces of Turkey were evaluated for seed antioxidant activity under four environments and two locations. Antioxidant activity was measured using ABTS radical scavenging capacity and mean antioxidant activity in common bean landraces was 20.03 µmol TE/g. Analysis of variance reflected that genotype by environment interaction was statistically non-significant and heritability analysis showed higher heritability of antioxidant activity. Variations in seed color were observed, and a higher antioxidant activity was present in seeds having colored seed as compared to those having white seeds. A negative correlation was found between white-colored seeds and antioxidant activity. A total of 7900 DArTseq markers were used to explore the population structure that grouped the studied germplasm into two sub-populations on the basis of their geographical origins and trolox equivalent antioxidant capacity contents. Mean linkage disequilibrium (LD) was 54%, and mean LD decay was 1.15 Mb. Mixed linear model i.e., the Q + K model demonstrated that four DArTseq markers had significant association ( p < 0.01) for antioxidant activity. Three of these markers were present on chromosome Pv07, while the fourth marker was located on chromosome Pv03. Among the identified markers, DArT-3369938 marker showed maximum (14.61%) variation. A total of four putative candidate genes were predicted from sequences reflecting homology to identified DArTseq markers. This is a pioneering study involving the identification of association for antioxidant activity in common bean seeds. We envisage that this study will be very helpful for global common bean breeding community in order to develop cultivars with higher antioxidant activity.
References: J Am Coll Nutr. 2018 Apr 27;:1-8. (PMID: 29702041)
Bioinformatics. 2007 Oct 1;23(19):2633-5. (PMID: 17586829)
Food Addit Contam. 2002 Jan;19(1):62-9. (PMID: 11811767)
Front Plant Sci. 2016 Aug 24;7:1272. (PMID: 27605931)
Theor Appl Genet. 2015 Aug;128(8):1555-67. (PMID: 26003191)
Plant J. 2017 Jan;89(1):85-103. (PMID: 27599367)
Curr Neuropharmacol. 2009 Mar;7(1):65-74. (PMID: 19721819)
Theor Appl Genet. 2009 Feb;118(3):619-29. (PMID: 19020852)
Nutrients. 2015 Feb 11;7(2):1144-73. (PMID: 25679229)
J Agric Food Chem. 2016 Jun 8;64(22):4695-703. (PMID: 27163766)
Plant Genome. 2016 Nov;9(3):. (PMID: 27902795)
Genes (Basel). 2018 Oct 23;9(11):. (PMID: 30360561)
Poult Sci. 1996 May;75(5):601-7. (PMID: 8722908)
Plant Physiol. 2014 Apr;164(4):1967-90. (PMID: 24567191)
PLoS One. 2016 Mar 01;11(3):e0150506. (PMID: 26930078)
J Agric Food Chem. 2007 Jan 10;55(1):90-8. (PMID: 17199318)
Foods. 2019 Jul 28;8(8):. (PMID: 31357736)
PLoS One. 2013;8(3):e59924. (PMID: 23533660)
BMC Genomics. 2018 Jan 25;19(1):81. (PMID: 29370751)
Plant Genome. 2017 Mar;10(1):. (PMID: 28464065)
Trends Biochem Sci. 2000 Feb;25(2):46-7. (PMID: 10664580)
Planta Med. 1986 Feb;(1):61-3. (PMID: 3703993)
Annu Rev Plant Biol. 2003;54:357-74. (PMID: 14502995)
BMC Genomics. 2017 Jul 12;18(1):529. (PMID: 28701220)
J Invest Dermatol. 2011 Jun;131(6):1308-12. (PMID: 21326295)
Sci Rep. 2018 Jan 30;8(1):1875. (PMID: 29382843)
Mol Genet Genomics. 2016 Apr;291(2):873-90. (PMID: 26638714)
Annu Rev Plant Biol. 2006;57:567-97. (PMID: 16669774)
Nutr J. 2010 Jan 22;9:3. (PMID: 20096093)
Biochem Soc Trans. 2007 Nov;35(Pt 5):1147-50. (PMID: 17956298)
Plant Physiol. 2008 Apr;146(4):1721-37. (PMID: 18305213)
Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11479-84. (PMID: 11562485)
Theor Appl Genet. 1968 Jun;38(6):226-31. (PMID: 24442307)
Eur J Nutr. 2001 Dec;40(6):261-7. (PMID: 11876489)
BMC Genomics. 2018 Oct 1;19(1):720. (PMID: 30285603)
Tree Physiol. 2012 Oct;32(10):1313-20. (PMID: 22971569)
PLoS One. 2018 Jun 1;13(6):e0198012. (PMID: 29856872)
New Phytol. 2013 Jan;197(1):300-13. (PMID: 23126683)
J Exp Bot. 2014 Nov;65(20):5795-809. (PMID: 25071223)
Plant Methods. 2013 Jul 22;9:29. (PMID: 23876160)
Genes (Basel). 2019 Aug 28;10(9):. (PMID: 31466344)
Res Pharm Sci. 2010 Jan;5(1):1-8. (PMID: 21589762)
Cell. 2015 Mar 26;161(1):56-66. (PMID: 25815985)
New Phytol. 2016 Aug;211(3):1035-51. (PMID: 27041000)
PLoS One. 2018 Oct 11;13(10):e0205363. (PMID: 30308006)
Mol Plant. 2016 Jul 6;9(7):975-85. (PMID: 27179918)
Genetics. 2004 May;167(1):471-83. (PMID: 15166170)
J Sci Food Agric. 2017 Jan;97(2):641-649. (PMID: 27133233)
فهرسة مساهمة: Keywords: GWAS; Phaseolus vulgaris; genetic basis; genotype by environment interaction; germplasm characterization; mixed linear model
المشرفين على المادة: 0 (Antioxidants)
0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20200108 Date Completed: 20200512 Latest Revision: 20200518
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC7016922
DOI: 10.3390/genes11010036
PMID: 31905657
قاعدة البيانات: MEDLINE
الوصف
تدمد:2073-4425
DOI:10.3390/genes11010036