دورية أكاديمية
أعرض في EDS

Development of diagnostic SNP markers for quality assurance and control in sweetpotato [Ipomoea batatas (L.) Lam.] breeding programs.

التفاصيل البيبلوغرافية
العنوان: Development of diagnostic SNP markers for quality assurance and control in sweetpotato [Ipomoea batatas (L.) Lam.] breeding programs.
المؤلفون: Gemenet DC; International Potato Center (CIP), ILRI Campus, Nairobi, Kenya., Kitavi MN; International Potato Center (CIP), ILRI Campus, Nairobi, Kenya., David M; International Potato Center (CIP), Apartado, Lima, Peru., Ndege D; International Potato Center (CIP), ILRI Campus, Nairobi, Kenya., Ssali RT; International Potato Center (CIP), Kumasi, Ghana., Swanckaert J; International Potato Center (CIP), Kampala, Uganda., Makunde G; International Potato Center (CIP), Maputo, Mozambique., Yencho GC; North Carolina State University, Raleigh, North Carolina, United States of America., Gruneberg W; International Potato Center (CIP), Apartado, Lima, Peru., Carey E; International Potato Center (CIP), Kumasi, Ghana., Mwanga RO; International Potato Center (CIP), Kampala, Uganda., Andrade MI; International Potato Center (CIP), Maputo, Mozambique., Heck S; International Potato Center (CIP), ILRI Campus, Nairobi, Kenya., Campos H; International Potato Center (CIP), Apartado, Lima, Peru.
المصدر: PloS one [PLoS One] 2020 Apr 24; Vol. 15 (4), pp. e0232173. Date of Electronic Publication: 2020 Apr 24 (Print Publication: 2020).
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: PubMed not MEDLINE; MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science
مستخلص: Quality assurance and control (QA/QC) is an essential element of a breeding program's optimization efforts towards increased genetic gains. Due to auto-hexaploid genome complexity, a low-cost marker platform for routine QA/QC in sweetpotato breeding programs is still unavailable. We used 662 parents of the International Potato Center (CIP)'s global breeding program spanning Peru, Uganda, Mozambique and Ghana, to develop a low-density highly informative single nucleotide polymorphism (SNP) marker set to be deployed for routine QA/QC. Segregation of the selected 30 SNPs (two SNPs per base chromosome) in a recombined breeding population was evaluated using 282 progeny from some of the parents above. The progeny were replicated from in-vitro, screenhouse and field, and the selected SNP-set was confirmed to identify relatively similar mislabeling error rates as a high density SNP-set of 10,159 markers. Six additional trait-specific markers were added to the selected SNP set from previous quantitative trait loci mapping studies. The 36-SNP set will be deployed for QA/QC in breeding pipelines and in fingerprinting of advanced clones or released varieties to monitor genetic gains in famers' fields. The study also enabled evaluation of CIP's global breeding population structure and the effect of some of the most devastating stresses like sweetpotato virus disease on genetic variation management. These results will inform future deployment of genomic selection in sweetpotato.
Competing Interests: The authors have declared that no competing interests exist.
التعليقات: Erratum in: PLoS One. 2020 May 21;15(5):e0233828. (PMID: 32437433)
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تواريخ الأحداث: Date Created: 20200425 Date Completed: 20200723 Latest Revision: 20240328
رمز التحديث: 20240329
مُعرف محوري في PubMed: PMC7182229
DOI: 10.1371/journal.pone.0232173
PMID: 32330201
قاعدة البيانات: MEDLINE
الوصف
تدمد:1932-6203
DOI:10.1371/journal.pone.0232173