دورية أكاديمية
أعرض في EDS

Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations.

التفاصيل البيبلوغرافية
العنوان: Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations.
المؤلفون: Fraik AK; School of Biological Sciences, Washington State University, Pullman, Washington, 99164., Margres MJ; School of Biological Sciences, Washington State University, Pullman, Washington, 99164., Epstein B; School of Biological Sciences, Washington State University, Pullman, Washington, 99164.; Plant Biology, University of Minnesota, Minneapolis, Minnesota, 55455., Barbosa S; Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive, Moscow, Idaho, 83844., Jones M; School of Biological Sciences, University of Tasmania, Hobart, TAS, 7004, Australia., Hendricks S; Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive, Moscow, Idaho, 83844., Schönfeld B; School of Biological Sciences, University of Tasmania, Hobart, TAS, 7004, Australia., Stahlke AR; Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive, Moscow, Idaho, 83844., Veillet A; Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive, Moscow, Idaho, 83844., Hamede R; School of Biological Sciences, University of Tasmania, Hobart, TAS, 7004, Australia., McCallum H; School of Environment, Griffith University Nathan, Nathan, QLD, 4111, Australia., Lopez-Contreras E; School of Biological Sciences, Washington State University, Pullman, Washington, 99164., Kallinen SJ; School of Biological Sciences, Washington State University, Pullman, Washington, 99164., Hohenlohe PA; Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, 875 Perimeter Drive, Moscow, Idaho, 83844., Kelley JL; School of Biological Sciences, Washington State University, Pullman, Washington, 99164., Storfer A; School of Biological Sciences, Washington State University, Pullman, Washington, 99164.
المصدر: Evolution; international journal of organic evolution [Evolution] 2020 Jul; Vol. 74 (7), pp. 1392-1408. Date of Electronic Publication: 2020 Jun 03.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0373224 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1558-5646 (Electronic) Linking ISSN: 00143820 NLM ISO Abbreviation: Evolution Subsets: MEDLINE
أسماء مطبوعة: Publication: 2023- : Oxford : Oxford University Press
Original Publication: Lancaster, Pa. : Society for the Study of Evolution
مواضيع طبية MeSH: Gene-Environment Interaction* , Selection, Genetic*, Host-Pathogen Interactions/*genetics , Marsupialia/*genetics, Adaptation, Biological ; Animals ; Genetic Variation
مستخلص: Landscape genomics studies focus on identifying candidate genes under selection via spatial variation in abiotic environmental variables, but rarely by biotic factors (i.e., disease). The Tasmanian devil (Sarcophilus harrisii) is found only on the environmentally heterogeneous island of Tasmania and is threatened with extinction by a transmissible cancer, devil facial tumor disease (DFTD). Devils persist in regions of long-term infection despite epidemiological model predictions of species' extinction, suggesting possible adaptation to DFTD. Here, we test the extent to which spatial variation and genetic diversity are associated with the abiotic environment (i.e., climatic variables, elevation, vegetation cover) and/or DFTD. We employ genetic-environment association analyses using 6886 SNPs from 3287 individuals sampled pre- and post-disease arrival across the devil's geographic range. Pre-disease, we find significant correlations of allele frequencies with environmental variables, including 365 unique loci linked to 71 genes, suggesting local adaptation to abiotic environment. The majority of candidate loci detected pre-DFTD are not detected post-DFTD arrival. Several post-DFTD candidate loci are associated with disease prevalence and were in linkage disequilibrium with genes involved in tumor suppression and immune response. Loss of apparent signal of abiotic local adaptation post-disease suggests swamping by strong selection resulting from the rapid onset of DFTD.
(© 2020 The Authors. Evolution © 2020 The Society for the Study of Evolution.)
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معلومات مُعتمدة: P30 GM103324 United States GM NIGMS NIH HHS; R01 GM126563 United States GM NIGMS NIH HHS; DEB-1316549 International National Science Foundation
تواريخ الأحداث: Date Created: 20200524 Date Completed: 20210323 Latest Revision: 20240607
رمز التحديث: 20240607
مُعرف محوري في PubMed: PMC7384379
DOI: 10.1111/evo.14023
PMID: 32445281
قاعدة البيانات: MEDLINE
الوصف
تدمد:1558-5646
DOI:10.1111/evo.14023