دورية أكاديمية
أعرض في EDS

Collagen Sequence Analysis Reveals Evolutionary History of Extinct West Indies Nesophontes (Island-Shrews).

التفاصيل البيبلوغرافية
العنوان: Collagen Sequence Analysis Reveals Evolutionary History of Extinct West Indies Nesophontes (Island-Shrews).
المؤلفون: Buckley M; Interdisciplinary Centre for Ancient Life, School of Natural Sciences, University of Manchester, Manchester, United Kingdom.; Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom., Harvey VL; Interdisciplinary Centre for Ancient Life, School of Natural Sciences, University of Manchester, Manchester, United Kingdom.; Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom., Orihuela J; Department of Earth and Environment, Florida International University, Miami, FL., Mychajliw AM; La Brea Tar Pits & Museum, Natural History Museum of Los Angeles County, Los Angeles, CA., Keating JN; School of Earth Sciences, University of Bristol, Life Sciences Building, Bristol, United Kingdom., Milan JNA; Museo Nacional de Historia Natural 'Prof. Eugenio de Jesús Marcano', Santo Domingo, Dominican Republic., Lawless C; School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom., Chamberlain AT; Interdisciplinary Centre for Ancient Life, School of Natural Sciences, University of Manchester, Manchester, United Kingdom., Egerton VM; Interdisciplinary Centre for Ancient Life, School of Natural Sciences, University of Manchester, Manchester, United Kingdom.; The Children's Museum of Indianapolis, Natural Sciences, Indianapolis, IN., Manning PL; Interdisciplinary Centre for Ancient Life, School of Natural Sciences, University of Manchester, Manchester, United Kingdom.; The Children's Museum of Indianapolis, Natural Sciences, Indianapolis, IN.
المصدر: Molecular biology and evolution [Mol Biol Evol] 2020 Oct 01; Vol. 37 (10), pp. 2931-2943.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE
أسماء مطبوعة: Publication: 2003- : New York, NY : Oxford University Press
Original Publication: [Chicago, Ill.] : University of Chicago Press, [c1983-
مواضيع طبية MeSH: Biological Evolution*, Collagen/*chemistry , Shrews/*genetics, Animals ; Female ; Male ; Mandible/anatomy & histology ; Phylogeography ; Sequence Analysis, Protein ; Sex Characteristics ; Shrews/anatomy & histology ; West Indies
مستخلص: Ancient biomolecule analyses are proving increasingly useful in the study of evolutionary patterns, including extinct organisms. Proteomic sequencing techniques complement genomic approaches, having the potential to examine lineages further back in time than achievable using ancient DNA, given the less stringent preservation requirements. In this study, we demonstrate the ability to use collagen sequence analyses via proteomics to assist species delimitation as a foundation for informing evolutionary patterns. We uncover biogeographic information of an enigmatic and recently extinct lineage of Nesophontes across their range on the Caribbean islands. First, evolutionary relationships reconstructed from collagen sequences reaffirm the affinity of Nesophontes and Solenodon as sister taxa within Solenodonota. This relationship helps lay the foundation for testing geographical isolation hypotheses across islands within the Greater Antilles, including movement from Cuba toward Hispaniola. Second, our results are consistent with Cuba having just two species of Nesophontes (N. micrus and N. major) that exhibit intrapopulation morphological variation. Finally, analysis of the recently described species from the Cayman Islands (N. hemicingulus) indicates that it is a closer relative to N. major rather than N. micrus as previously speculated. This proteomic sequencing improves our understanding of the origin, evolution, and distribution of this extinct mammal lineage, particularly with respect to the approximate timing of speciation. Such knowledge is vital for this biodiversity hotspot, where the magnitude of recent extinctions may obscure true estimates of species richness in the past.
(© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
References: J Evol Biol. 2009 Jun;22(6):1163-71. (PMID: 19389155)
PLoS One. 2015 Nov 05;10(11):e0139611. (PMID: 26540101)
Philos Trans R Soc Lond B Biol Sci. 2004 Apr 29;359(1444):711-9. (PMID: 15253356)
Nature. 2001 Apr 12;410(6830):771-2. (PMID: 11298436)
Rapid Commun Mass Spectrom. 2014 Mar 30;28(6):605-15. (PMID: 24519823)
Gigascience. 2018 Jun 1;7(6):. (PMID: 29718205)
Rapid Commun Mass Spectrom. 2009 Dec;23(23):3843-54. (PMID: 19899187)
Mol Biol Evol. 2016 Dec;33(12):3095-3103. (PMID: 27624716)
Science. 2011 Oct 28;334(6055):521-4. (PMID: 21940861)
Biol Lett. 2013 Apr 24;9(3):20130118. (PMID: 23616645)
Biol Lett. 2014 Jun;10(6):. (PMID: 24899682)
Ecol Evol. 2017 Aug 01;7(17):7080-7090. (PMID: 28904785)
Mol Phylogenet Evol. 2018 Apr;121:158-165. (PMID: 29331683)
Toxicon. 2012 Jun 1;59(7-8):680-95. (PMID: 22410495)
Biol Lett. 2007 Apr 22;3(2):193-6. (PMID: 17251123)
Mol Biol Evol. 2017 Mar 1;34(3):772-773. (PMID: 28013191)
Nature. 2004 Jun 10;429(6992):649-51. (PMID: 15190349)
Am J Phys Anthropol. 1999 Sep;110(1):95-104. (PMID: 10490471)
Proc Biol Sci. 2012 Sep 7;279(1742):3491-500. (PMID: 22628470)
PLoS One. 2013;8(3):e59614. (PMID: 23555726)
Trends Ecol Evol. 2007 Mar;22(3):148-55. (PMID: 17129636)
Proc Natl Acad Sci U S A. 2019 Dec 17;116(51):25745-25755. (PMID: 31772017)
Syst Biol. 2018 Sep 1;67(5):901-904. (PMID: 29718447)
Biol Lett. 2014 Jul;10(7):. (PMID: 25115033)
BMC Evol Biol. 2014 Sep 16;14:199. (PMID: 25220489)
Proc Biol Sci. 2017 Sep 27;284(1863):. (PMID: 28954908)
PLoS One. 2016 Mar 03;11(3):e0150650. (PMID: 26938469)
Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699):. (PMID: 27325836)
Q Rev Biol. 1994 Dec;69(4):473-90. (PMID: 7855232)
Genome Biol Evol. 2016 Jan 05;8(2):330-44. (PMID: 26733575)
Mol Biol Evol. 2007 Aug;24(8):1586-91. (PMID: 17483113)
Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2699-704. (PMID: 21282603)
Syst Biol. 2012 May;61(3):539-42. (PMID: 22357727)
Proc Biol Sci. 2015 May 7;282(1806):20142671. (PMID: 25833851)
Philos Trans R Soc Lond B Biol Sci. 2011 Sep 12;366(1577):2564-76. (PMID: 21807737)
Proc Natl Acad Sci U S A. 1989 Mar;86(6):1939-43. (PMID: 2928314)
Nature. 2007 May 10;447(7141):202-5. (PMID: 17495925)
Nat Commun. 2013;4:1550. (PMID: 23462993)
Rapid Commun Mass Spectrom. 2016 Apr 15;30(7):805-12. (PMID: 27408951)
Am J Phys Anthropol. 1994 Aug;94(4):465-76. (PMID: 7977674)
Philos Trans R Soc Lond B Biol Sci. 2008 Jul 27;363(1502):2393-413. (PMID: 17446164)
Bioinformatics. 2019 Dec 15;35(24):5321-5322. (PMID: 31292621)
فهرسة مساهمة: Keywords: Nesophontes; biogeography; collagen fingerprinting; paleoproteomics; phylogenetics
المشرفين على المادة: 9007-34-5 (Collagen)
تواريخ الأحداث: Date Created: 20200605 Date Completed: 20210415 Latest Revision: 20231112
رمز التحديث: 20231112
مُعرف محوري في PubMed: PMC7530613
DOI: 10.1093/molbev/msaa137
PMID: 32497204
قاعدة البيانات: MEDLINE
الوصف
تدمد:1537-1719
DOI:10.1093/molbev/msaa137