دورية أكاديمية

Ribosome Fingerprinting with a Solid-State Nanopore.

التفاصيل البيبلوغرافية
العنوان: Ribosome Fingerprinting with a Solid-State Nanopore.
المؤلفون: Raveendran M; School of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K., Leach AR; School of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K., Hopes T; School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, U.K.; LeedsOmics, University of Leeds, Leeds LS2 9JT, U.K., Aspden JL; School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, U.K.; LeedsOmics, University of Leeds, Leeds LS2 9JT, U.K., Actis P; School of Electronic and Electrical Engineering and Pollard Institute, University of Leeds, Leeds LS2 9JT, U.K.; LeedsOmics, University of Leeds, Leeds LS2 9JT, U.K.; Bragg Centre for Materials Research, Leeds LS2 9JT, U.K.
المصدر: ACS sensors [ACS Sens] 2020 Nov 25; Vol. 5 (11), pp. 3533-3539. Date of Electronic Publication: 2020 Oct 28.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101669031 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-3694 (Electronic) Linking ISSN: 23793694 NLM ISO Abbreviation: ACS Sens Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Washington, DC : American Chemical Society, [2016]-
مواضيع طبية MeSH: Nanopores*, Humans ; Polyribosomes/metabolism ; Protein Biosynthesis ; RNA, Messenger/metabolism ; Ribosomes/metabolism
مستخلص: Nanopores hold great potential for the analysis of complex biological molecules at the single-entity level. One particularly interesting macromolecular machine is the ribosome, responsible for translating mRNAs into proteins. In this study, we use a solid-state nanopore to fingerprint 80S ribosomes and polysomes from a human neuronal cell line and Drosophila melanogaster cultured cells and ovaries. Specifically, we show that the peak amplitude and dwell time characteristics of 80S ribosomes are distinct from polysomes and can be used to discriminate ribosomes from polysomes in mixed samples. Moreover, we are able to distinguish large polysomes, containing more than seven ribosomes, from those containing two to three ribosomes, and demonstrate a correlation between polysome size and peak amplitude. This study highlights the application of solid-state nanopores as a rapid analytical tool for the detection and characterization of ribosomal complexes.
References: Cold Spring Harb Perspect Biol. 2012 May 01;4(5):. (PMID: 22550233)
Nano Lett. 2018 Sep 12;18(9):6084-6093. (PMID: 30105906)
Science. 1960 Jan 1;131(3392):32-3. (PMID: 17794662)
Cell. 2015 May 7;161(4):845-57. (PMID: 25957688)
Elife. 2020 Jan 14;9:. (PMID: 31931956)
Bioessays. 2008 Nov;30(11-12):1220-34. (PMID: 18937376)
Anal Chem. 2017 Jan 3;89(1):157-188. (PMID: 28105845)
Nat Commun. 2019 Aug 16;10(1):3712. (PMID: 31420559)
Nucleic Acids Res. 2017 Feb 17;45(3):e15. (PMID: 28180329)
PLoS One. 2014 Jul 08;9(7):e101084. (PMID: 25003985)
Nano Lett. 2020 Jul 8;20(7):5553-5561. (PMID: 32559088)
Chem Rev. 2000 Jul 12;100(7):2575-2594. (PMID: 11749296)
ACS Nano. 2014 Jun 24;8(6):6425-6430. (PMID: 24861167)
Cell Rep. 2013 Sep 26;4(6):1276-87. (PMID: 24055062)
Trends Biochem Sci. 2002 Jul;27(7):376-80. (PMID: 12114027)
Annu Rev Anal Chem (Palo Alto Calif). 2019 Jun 12;12(1):371-387. (PMID: 30707594)
Cell. 2017 Jun 1;169(6):1051-1065.e18. (PMID: 28575669)
Dev Growth Differ. 2019 Jun;61(5):316-326. (PMID: 31037722)
Biosens Bioelectron. 2011 Nov 15;29(1):34-9. (PMID: 21855314)
Cell. 2016 Feb 11;164(4):757-69. (PMID: 26871635)
Nat Commun. 2017 Nov 13;8(1):1458. (PMID: 29133841)
Chem Commun (Camb). 2017 Jul 27;53(61):8620-8623. (PMID: 28721409)
Nucleic Acids Res. 2018 Jan 9;46(1):e3. (PMID: 29069469)
Brief Funct Genomics. 2016 Jan;15(1):22-31. (PMID: 25380596)
Chem Sci. 2019 Oct 8;10(46):10728-10732. (PMID: 32153747)
Nano Lett. 2012 Feb 8;12(2):1038-44. (PMID: 22229707)
Nat Commun. 2020 Sep 1;11(1):4384. (PMID: 32873796)
J Vis Exp. 2019 Jun 3;(148):. (PMID: 31205309)
Bio Protoc. 2017 Feb 5;7(3):. (PMID: 28516123)
Nano Lett. 2016 Jan 13;16(1):138-44. (PMID: 26609994)
Nucleic Acids Res. 2017 Jun 2;45(10):5945-5957. (PMID: 28460002)
Micromachines (Basel). 2017 Jun 25;8(7):. (PMID: 30400393)
Nat Nanotechnol. 2007 Apr;2(4):209-15. (PMID: 18654264)
Anal Chem. 2016 May 17;88(10):5523-30. (PMID: 27108872)
Elife. 2018 Aug 10;7:. (PMID: 30095066)
Prog Mol Biol Transl Sci. 2016;139:73-99. (PMID: 26970191)
Ann Bot. 2005 Sep;96(4):647-60. (PMID: 16081496)
Sci Data. 2018 Dec 04;5:180287. (PMID: 30512016)
Annu Rev Anal Chem (Palo Alto Calif). 2018 Jun 12;11(1):265-286. (PMID: 29894227)
Proc Natl Acad Sci U S A. 1963 Jan 15;49:122-9. (PMID: 13998950)
معلومات مُعتمدة: United Kingdom WT_ Wellcome Trust; BB/S007407/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; 105615/Z/14/Z United Kingdom WT_ Wellcome Trust
فهرسة مساهمة: Keywords: nanopipette; nanopore; polysome; ribosome; single-molecule; translation
المشرفين على المادة: 0 (RNA, Messenger)
تواريخ الأحداث: Date Created: 20201028 Date Completed: 20210514 Latest Revision: 20210514
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC7706116
DOI: 10.1021/acssensors.0c01642
PMID: 33111519
قاعدة البيانات: MEDLINE
الوصف
تدمد:2379-3694
DOI:10.1021/acssensors.0c01642