دورية أكاديمية
Sequence analysis of new variants of porcine epidemic diarrhea virus in Luzon, Philippines, in 2017.
| العنوان: | Sequence analysis of new variants of porcine epidemic diarrhea virus in Luzon, Philippines, in 2017. |
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| المؤلفون: | Salamat SEA; College of Veterinary Medicine, University of the Philippines Los Baños, Laguna, Philippines. sasalamat@up.edu.ph., Collantes TMA; College of Veterinary Medicine, University of the Philippines Los Baños, Laguna, Philippines., Lumbera WML; College of Veterinary Medicine, University of the Philippines Los Baños, Laguna, Philippines., Tablizo FA; Philippine Genome Center, University of the Philippines System, Quezon City, Philippines., Mutia CTM; Institute of Biological Sciences, University of the Philippines Los Baños, Laguna, Philippines., Ong JDP; Institute of Biological Sciences, University of the Philippines Los Baños, Laguna, Philippines., Bandoy DJDR; College of Veterinary Medicine, University of the Philippines Los Baños, Laguna, Philippines. |
| المصدر: | Archives of virology [Arch Virol] 2021 Jul; Vol. 166 (7), pp. 1859-1867. Date of Electronic Publication: 2021 Apr 19. |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Springer-Verlag Country of Publication: Austria NLM ID: 7506870 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-8798 (Electronic) Linking ISSN: 03048608 NLM ISO Abbreviation: Arch Virol Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: Wien, New York, Springer-Verlag. |
| مواضيع طبية MeSH: | Coronavirus Infections/*virology , Porcine epidemic diarrhea virus/*genetics , Swine Diseases/*virology, Animals ; Asia ; Disease Outbreaks/veterinary ; Europe ; Farms ; Genome, Viral/genetics ; North America ; Philippines ; Phylogeny ; Sequence Analysis, DNA/methods ; Swine |
| مستخلص: | Porcine epidemic diarrhea virus (PEDV) is a coronavirus that causes emaciation and watery diarrhea in pigs. First identified in Europe in 1977, it eventually spread to Asia and North America, causing deadly outbreaks in neonatal piglets. In the Philippines, PEDV has caused several recorded outbreaks since 2005. However, DNA sequencing studies of local PEDV strains remain few and are limited to gene and gene fragment sequencing. Therefore, to provide updated sequence information about recent PEDV strains in the country, we performed reverse transcription PCR and sequencing of PEDV from swab samples collected from swine farms in the Philippines in 2017. Here, we report the first published whole genome sequence of PEDV from the Philippines as well as CO-26K equivalent (COE) domain sequences of strains from three provinces in Luzon where PEDV was detected in 2017. Sequence analysis suggested that PEDV from both the classical (genotype 1) and pandemic (genotype 2) groups are present in the Philippines, with possible East Asian and North American origins. |
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| تواريخ الأحداث: | Date Created: 20210420 Date Completed: 20210622 Latest Revision: 20210622 |
| رمز التحديث: | 20231215 |
| مُعرف محوري في PubMed: | PMC8055054 |
| DOI: | 10.1007/s00705-021-05068-0 |
| PMID: | 33876315 |
| قاعدة البيانات: | MEDLINE |
Find this article in full text from Springer Verlag. 
Full Text Finder | تدمد: | 1432-8798 |
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| DOI: | 10.1007/s00705-021-05068-0 |