دورية أكاديمية

ERG transcription factors have a splicing regulatory function involving RBFOX2 that is altered in the EWS-FLI1 oncogenic fusion.

التفاصيل البيبلوغرافية
العنوان: ERG transcription factors have a splicing regulatory function involving RBFOX2 that is altered in the EWS-FLI1 oncogenic fusion.
المؤلفون: Saulnier O; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France.; Université Paris Diderot, Sorbonne Paris Cité, F-75013 Paris, France., Guedri-Idjouadiene K; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Aynaud MM; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Chakraborty A; Institut Curie, PSL Research University, CNRS UMR3348, INSERM U1278, F-91405 Orsay, France.; Université Paris-Saclay, CNRS UMR3348, INSERM U1278, F-91405 Orsay, France.; Équipe Labellisée Ligue Nationale Contre le Cancer, F-91405 Orsay, France., Bruyr J; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Pineau J; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., O'Grady T; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Mirabeau O; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Grossetête S; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Galvan B; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Claes M; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Al Oula Hassoun Z; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Sadacca B; INSERM U932, RT2Lab Team, Translational Research Department, PSL Research University, Institut Curie, F-75005 Paris, France.; CNRS UMR5219, Institut de Mathématiques de Toulouse; Université de Toulouse; F-31062 Toulouse, France., Laud K; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Zaïdi S; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Surdez D; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Baulande S; Institut Curie, PSL Research University, NGS Platform, 26 rue d'Ulm, F-75005 Paris, France., Rambout X; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium., Tirode F; Claude Bernard University Lyon 1, INSERM 1052, CNRS 5286, Cancer Research Center of Lyon (CRCL), Lyon University, Lyon, France., Dutertre M; Institut Curie, PSL Research University, CNRS UMR3348, INSERM U1278, F-91405 Orsay, France.; Université Paris-Saclay, CNRS UMR3348, INSERM U1278, F-91405 Orsay, France.; Équipe Labellisée Ligue Nationale Contre le Cancer, F-91405 Orsay, France., Delattre O; INSERM U830, Équipe Labellisée LNCC, PSL Research University, SIREDO Oncology Centre, Institut Curie, 75005 Paris, France., Dequiedt F; University of Liège, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Liège, Belgium.; University of Liège, GIGA-Molecular Biology of Diseases, Liège, Belgium.
المصدر: Nucleic acids research [Nucleic Acids Res] 2021 May 21; Vol. 49 (9), pp. 5038-5056.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
أسماء مطبوعة: Publication: 1992- : Oxford : Oxford University Press
Original Publication: London, Information Retrieval ltd.
مواضيع طبية MeSH: Alternative Splicing*, Oncogene Proteins, Fusion/*metabolism , Proto-Oncogene Protein c-fli-1/*metabolism , RNA Splicing Factors/*metabolism , RNA-Binding Protein EWS/*metabolism , Repressor Proteins/*metabolism, Calmodulin-Binding Proteins/genetics ; Calmodulin-Binding Proteins/metabolism ; Cell Line ; Cell Line, Tumor ; HeLa Cells ; Human Umbilical Vein Endothelial Cells/metabolism ; Humans ; Protein Domains ; Sarcoma, Ewing/genetics ; Sarcoma, Ewing/metabolism ; Transcriptional Regulator ERG/chemistry ; Transcriptional Regulator ERG/metabolism
مستخلص: ERG family proteins (ERG, FLI1 and FEV) are a subfamily of ETS transcription factors with key roles in physiology and development. In Ewing sarcoma, the oncogenic fusion protein EWS-FLI1 regulates both transcription and alternative splicing of pre-messenger RNAs. However, whether wild-type ERG family proteins might regulate splicing is unknown. Here, we show that wild-type ERG proteins associate with spliceosomal components, are found on nascent RNAs, and induce alternative splicing when recruited onto a reporter minigene. Transcriptomic analysis revealed that ERG and FLI1 regulate large numbers of alternative spliced exons (ASEs) enriched with RBFOX2 motifs and co-regulated by this splicing factor. ERG and FLI1 are associated with RBFOX2 via their conserved carboxy-terminal domain, which is present in EWS-FLI1. Accordingly, EWS-FLI1 is also associated with RBFOX2 and regulates ASEs enriched in RBFOX2 motifs. However, in contrast to wild-type ERG and FLI1, EWS-FLI1 often antagonizes RBFOX2 effects on exon inclusion. In particular, EWS-FLI1 reduces RBFOX2 binding to the ADD3 pre-mRNA, thus increasing its long isoform, which represses the mesenchymal phenotype of Ewing sarcoma cells. Our findings reveal a RBFOX2-mediated splicing regulatory function of wild-type ERG family proteins, that is altered in EWS-FLI1 and contributes to the Ewing sarcoma cell phenotype.
(© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.)
References: RNA. 2012 May;18(5):1041-9. (PMID: 22456266)
Nat Methods. 2006 Dec;3(12):977-9. (PMID: 17099704)
Nat Struct Mol Biol. 2016 Jul;23(7):663-72. (PMID: 27273514)
Cell. 2017 Sep 21;171(1):163-178.e19. (PMID: 28844694)
Nucleic Acids Res. 2016 Jul 8;44(W1):W333-8. (PMID: 27174931)
Mol Cell Biol. 2016 May 16;36(11):1704-19. (PMID: 27044866)
Bioinformatics. 2013 Jan 1;29(1):15-21. (PMID: 23104886)
Mol Cell. 2017 Feb 2;65(3):539-553.e7. (PMID: 28157508)
Science. 2005 Oct 28;310(5748):644-8. (PMID: 16254181)
Bioinformatics. 2010 Mar 15;26(6):841-2. (PMID: 20110278)
Cell Rep. 2014 May 22;7(4):1211-26. (PMID: 24813895)
Oncogene. 2014 Feb 27;33(9):1082-92. (PMID: 23435423)
Bioinformatics. 2015 Jan 15;31(2):166-9. (PMID: 25260700)
Genes Cancer. 2012 Feb;3(2):102-16. (PMID: 23050043)
Genes Dev. 2008 Sep 15;22(18):2550-63. (PMID: 18794351)
Nucleic Acids Res. 2019 Oct 10;47(18):9619-9636. (PMID: 31392992)
Cell. 2017 Jul 13;170(2):312-323.e10. (PMID: 28708999)
Cell. 2013 Mar 14;152(6):1252-69. (PMID: 23498935)
Biomed Res Int. 2018 May 16;2018:3465929. (PMID: 29862265)
Annu Rev Biochem. 2011;80:437-71. (PMID: 21548782)
Nucleic Acids Res. 2000 Sep 15;28(18):3442-4. (PMID: 10982861)
PLoS One. 2009;4(3):e4932. (PMID: 19305498)
PLoS Genet. 2018 Nov 30;14(11):e1007826. (PMID: 30500808)
Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10149-54. (PMID: 18626011)
Oncogene. 1993 Jul;8(7):1751-5. (PMID: 8510921)
Cancer Cell. 2014 Nov 10;26(5):668-681. (PMID: 25453903)
Cancer Cell. 2007 May;11(5):421-9. (PMID: 17482132)
Annu Rev Biochem. 2018 Jun 20;87:351-390. (PMID: 29195049)
Nat Rev Mol Cell Biol. 2001 Nov;2(11):827-37. (PMID: 11715049)
Genome Biol. 2014;15(12):550. (PMID: 25516281)
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9. (PMID: 16381927)
Nat Struct Mol Biol. 2010 Nov;17(11):1358-66. (PMID: 20972445)
Oncogene. 2017 Jun 22;36(25):3505-3514. (PMID: 28135250)
Trends Biochem Sci. 2018 Aug;43(8):576-592. (PMID: 29941230)
Proc Natl Acad Sci U S A. 2008 Apr 22;105(16):6004-9. (PMID: 18413612)
Nature. 1992 Sep 10;359(6391):162-5. (PMID: 1522903)
Cancer Res. 1994 Jun 1;54(11):2865-8. (PMID: 8187069)
Chem Rev. 2018 Apr 25;118(8):4339-4364. (PMID: 29251915)
Cell. 2016 Apr 21;165(3):606-19. (PMID: 27104978)
J Biol Chem. 2000 Aug 11;275(32):24865-71. (PMID: 10827180)
Wiley Interdiscip Rev RNA. 2017 Mar;8(2):. (PMID: 27748060)
Nature. 2013 Jul 11;499(7457):172-7. (PMID: 23846655)
Clin Cancer Res. 2007 Apr 15;13(8):2429-40. (PMID: 17438102)
Nat Methods. 2011 Nov 29;8(12):990-2. (PMID: 22127214)
RNA. 2012 Feb;18(2):274-83. (PMID: 22184459)
Nat Commun. 2016 Mar 31;7:10846. (PMID: 27029405)
Genes Dev. 2014 Mar 15;28(6):637-51. (PMID: 24637117)
Science. 2018 Jul 27;361(6400):. (PMID: 29930090)
Mol Cell. 2012 Feb 24;45(4):567-80. (PMID: 22365833)
Genome Biol. 2008;9(9):R137. (PMID: 18798982)
Nat Methods. 2012 Mar 04;9(4):357-9. (PMID: 22388286)
Cold Spring Harb Perspect Biol. 2019 Aug 1;11(8):. (PMID: 31371351)
Nat Struct Mol Biol. 2012 Oct;19(10):1044-52. (PMID: 22983564)
Cancer Res. 2005 Dec 15;65(24):11459-68. (PMID: 16357154)
Cell. 2000 Dec 22;103(7):1121-31. (PMID: 11163187)
J Biol Chem. 2001 Jun 22;276(25):22317-22. (PMID: 11301318)
PLoS Genet. 2011 Aug;7(8):e1002218. (PMID: 21876675)
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1307-16. (PMID: 25737553)
Cancer Res. 2000 Mar 15;60(6):1536-40. (PMID: 10749119)
Bioinformatics. 2009 Aug 15;25(16):2078-9. (PMID: 19505943)
Genes Dev. 2017 Sep 15;31(18):1910-1925. (PMID: 29021239)
Mol Cell Biol. 2013 Jan;33(2):396-405. (PMID: 23149937)
Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):E5593-601. (PMID: 25480548)
Mol Cell Biol. 2012 Jan;32(2):513-26. (PMID: 22083953)
Cancer Discov. 2014 Nov;4(11):1342-53. (PMID: 25223734)
Elife. 2019 Jul 08;8:. (PMID: 31283468)
J Biol Chem. 2006 Jul 14;281(28):19145-55. (PMID: 16698794)
المشرفين على المادة: 0 (ADD3 protein, human)
0 (Calmodulin-Binding Proteins)
0 (ERG protein, human)
0 (EWS-FLI fusion protein)
0 (FLI1 protein, human)
0 (Oncogene Proteins, Fusion)
0 (Proto-Oncogene Protein c-fli-1)
0 (RBFOX2 protein, human)
0 (RNA Splicing Factors)
0 (RNA-Binding Protein EWS)
0 (Repressor Proteins)
0 (Transcriptional Regulator ERG)
تواريخ الأحداث: Date Created: 20210519 Date Completed: 20210706 Latest Revision: 20210706
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC8136815
DOI: 10.1093/nar/gkab305
PMID: 34009296
قاعدة البيانات: MEDLINE
الوصف
تدمد:1362-4962
DOI:10.1093/nar/gkab305