دورية أكاديمية

Identifying SARS-CoV-2 antiviral compounds by screening for small molecule inhibitors of nsp13 helicase.

التفاصيل البيبلوغرافية
العنوان: Identifying SARS-CoV-2 antiviral compounds by screening for small molecule inhibitors of nsp13 helicase.
المؤلفون: Zeng J; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Weissmann F; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Bertolin AP; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Posse V; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Canal B; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Ulferts R; Cell Biology of Infection Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Wu M; High Throughput Screening, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Harvey R; World Influenza Centre, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Hussain S; World Influenza Centre, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Milligan JC; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Roustan C; Structural Biology, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Borg A; Structural Biology, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., McCoy L; Division of Infection and Immunity, University College London, London WC1E 6BT, U.K., Drury LS; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Kjaer S; Structural Biology, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., McCauley J; World Influenza Centre, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Howell M; High Throughput Screening, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Beale R; Cell Biology of Infection Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K., Diffley JFX; Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, U.K.
المصدر: The Biochemical journal [Biochem J] 2021 Jul 16; Vol. 478 (13), pp. 2405-2423.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Published by Portland Press on behalf of the Biochemical Society Country of Publication: England NLM ID: 2984726R Publication Model: Print Cited Medium: Internet ISSN: 1470-8728 (Electronic) Linking ISSN: 02646021 NLM ISO Abbreviation: Biochem J Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London, UK : Published by Portland Press on behalf of the Biochemical Society
مواضيع طبية MeSH: Drug Evaluation, Preclinical*, Antiviral Agents/*chemistry , Antiviral Agents/*pharmacology , RNA Helicases/*antagonists & inhibitors , SARS-CoV-2/*enzymology , Small Molecule Libraries/*pharmacology , Viral Nonstructural Proteins/*antagonists & inhibitors, Animals ; Chlorocebus aethiops ; Enzyme Assays ; Fluorescence Resonance Energy Transfer ; High-Throughput Screening Assays ; RNA Helicases/metabolism ; Reproducibility of Results ; SARS-CoV-2/drug effects ; Small Molecule Libraries/chemistry ; Suramin/pharmacology ; Vero Cells ; Viral Nonstructural Proteins/metabolism
مستخلص: The coronavirus disease 2019 (COVID-19) pandemic, which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a global public health challenge. While the efficacy of vaccines against emerging and future virus variants remains unclear, there is a need for therapeutics. Repurposing existing drugs represents a promising and potentially rapid opportunity to find novel antivirals against SARS-CoV-2. The virus encodes at least nine enzymatic activities that are potential drug targets. Here, we have expressed, purified and developed enzymatic assays for SARS-CoV-2 nsp13 helicase, a viral replication protein that is essential for the coronavirus life cycle. We screened a custom chemical library of over 5000 previously characterized pharmaceuticals for nsp13 inhibitors using a fluorescence resonance energy transfer-based high-throughput screening approach. From this, we have identified FPA-124 and several suramin-related compounds as novel inhibitors of nsp13 helicase activity in vitro. We describe the efficacy of these drugs using assays we developed to monitor SARS-CoV-2 growth in Vero E6 cells.
(© 2021 The Author(s).)
References: Curr Pharm Des. 2006;12(11):1315-38. (PMID: 16611118)
Proc Natl Acad Sci U S A. 2016 Apr 5;113(14):E2011-8. (PMID: 27001857)
Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2564-9. (PMID: 27114506)
Sci Rep. 2020 Nov 2;10(1):18850. (PMID: 33139812)
Cell Mol Biol (Noisy-le-grand). 2012 Dec 22;58(1):114-21. (PMID: 23273200)
Sci Rep. 2018 Mar 7;8(1):4129. (PMID: 29515206)
Biochem Biophys Res Commun. 2014 Oct 24;453(3):539-44. (PMID: 25281902)
N Engl J Med. 2020 Jun 11;382(24):2327-2336. (PMID: 32275812)
Nat Rev Drug Discov. 2004 Aug;3(8):673-83. (PMID: 15286734)
Sci Rep. 2017 Feb 20;7:42902. (PMID: 28218309)
Curr Opin Struct Biol. 2010 Jun;20(3):313-24. (PMID: 20456941)
J Biomol Screen. 1999;4(2):67-73. (PMID: 10838414)
Elife. 2020 Oct 28;9:. (PMID: 33112236)
Lancet Infect Dis. 2021 Jan;21(1):52-58. (PMID: 33058797)
ACS Chem Biol. 2017 Mar 17;12(3):575-578. (PMID: 28244728)
Biochem J. 2021 Jul 16;478(13):2425-2443. (PMID: 34198323)
Br J Pharmacol. 2018 Jan;175(2):181-191. (PMID: 28685814)
Antimicrob Agents Chemother. 2012 Sep;56(9):4718-28. (PMID: 22733076)
J Virol. 2004 Jun;78(11):5619-32. (PMID: 15140959)
Lancet. 2010 Jan 9;375(9709):148-59. (PMID: 19833383)
PLoS Pathog. 2017 Jun 26;13(6):e1006474. (PMID: 28651017)
J Med Chem. 2003 Oct 9;46(21):4477-86. (PMID: 14521410)
J Med Chem. 2015 Sep 10;58(17):7076-87. (PMID: 26295373)
PLoS Pathog. 2015 Oct 02;11(10):e1005184. (PMID: 26430888)
Cell Res. 2020 Mar;30(3):269-271. (PMID: 32020029)
Antimicrob Agents Chemother. 2020 Feb 21;64(3):. (PMID: 31844000)
Cell. 2020 May 14;181(4):914-921.e10. (PMID: 32330414)
J Mol Biol. 2012 Jun 8;419(3-4):198-210. (PMID: 22446684)
Cell Rep. 2021 Apr 6;35(1):108940. (PMID: 33784499)
J Med Chem. 2010 Jul 8;53(13):4891-905. (PMID: 20540517)
ChemMedChem. 2014 May;9(5):933-9. (PMID: 24616282)
J Virol. 2005 Feb;79(3):1635-44. (PMID: 15650189)
J Virol. 2004 Jul;78(14):7833-8. (PMID: 15220459)
Nat Rev Microbiol. 2021 Mar;19(3):155-170. (PMID: 33116300)
Biochem J. 2021 Jul 16;478(13):2517-2531. (PMID: 34198325)
PLoS One. 2014 Mar 12;9(3):e91765. (PMID: 24622391)
Mol Pharmacol. 2004 Dec;66(6):1738-47. (PMID: 15448189)
J Med Chem. 2002 Apr 11;45(8):1712-22. (PMID: 11931626)
Nat Commun. 2020 Nov 18;11(1):5874. (PMID: 33208736)
Emerg Microbes Infect. 2014 Sep;3(9):e62. (PMID: 26038755)
Biochem J. 2021 Jul 16;478(13):2481-2497. (PMID: 34198328)
Nat Rev Immunol. 2021 Feb;21(2):73-82. (PMID: 33340022)
RNA. 2000 Jul;6(7):1056-68. (PMID: 10917600)
Virology. 2007 Feb 5;358(1):136-47. (PMID: 16979681)
Nat Chem. 2019 May;11(5):402-418. (PMID: 30988417)
N Engl J Med. 2019 Dec 12;381(24):2293-2303. (PMID: 31774950)
Nat Commun. 2021 Jan 12;12(1):279. (PMID: 33436624)
Antimicrob Agents Chemother. 2014 Aug;58(8):4894-8. (PMID: 24841268)
Nat Biotechnol. 2012 Jul 10;30(7):679-92. (PMID: 22781697)
J Med Chem. 2006 Jun 29;49(13):3800-8. (PMID: 16789737)
Nat Protoc. 2006;1(2):550-3. (PMID: 17191086)
Nucleic Acids Res. 2010 Nov;38(21):7626-36. (PMID: 20671029)
Molecules. 2012 Sep 07;17(9):10774-90. (PMID: 22960870)
J Med Chem. 2008 Apr 24;51(8):2502-11. (PMID: 18333608)
Nature. 2016 Mar 17;531(7594):381-5. (PMID: 26934220)
Mol Cell. 2020 Oct 1;80(1):164-174.e4. (PMID: 32877642)
Biochem J. 2021 Jul 16;478(13):2499-2515. (PMID: 34198327)
J Biol Chem. 2003 Oct 10;278(41):39578-82. (PMID: 12917423)
J Virol. 2005 Jan;79(2):696-704. (PMID: 15613297)
Bioorg Med Chem Lett. 2012 Jun 15;22(12):4049-54. (PMID: 22578462)
Cell Host Microbe. 2020 Mar 11;27(3):325-328. (PMID: 32035028)
PLoS Biol. 2018 Aug 13;16(8):e3000003. (PMID: 30102691)
Cell. 2020 Sep 3;182(5):1284-1294.e9. (PMID: 32730807)
J Struct Biol. 2010 Oct;172(1):45-54. (PMID: 20178849)
J Virol. 1968 Oct;2(10):955-61. (PMID: 4302013)
Science. 2020 May 22;368(6493):829-830. (PMID: 32385101)
Biochem J. 2021 Jul 16;478(13):2465-2479. (PMID: 34198324)
PLoS One. 2012;7(5):e36521. (PMID: 22615777)
N Engl J Med. 2020 Nov 5;383(19):1813-1826. (PMID: 32445440)
Nature. 2020 Jul;583(7816):459-468. (PMID: 32353859)
J Transl Med. 2020 Apr 22;18(1):179. (PMID: 32321524)
Biochem J. 2021 Jul 16;478(13):2445-2464. (PMID: 34198326)
Antimicrob Agents Chemother. 2020 Jul 22;64(8):. (PMID: 32513797)
Cell. 2020 Sep 17;182(6):1560-1573.e13. (PMID: 32783916)
Biophys J. 2021 Mar 16;120(6):1020-1030. (PMID: 33340543)
فهرسة مساهمة: Keywords: COVID-19; RNA helicase; coronavirus; nsp13
المشرفين على المادة: 0 (Antiviral Agents)
0 (Small Molecule Libraries)
0 (Viral Nonstructural Proteins)
6032D45BEM (Suramin)
EC 3.6.4.13 (RNA Helicases)
تواريخ الأحداث: Date Created: 20210701 Date Completed: 20210708 Latest Revision: 20210803
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC8286831
DOI: 10.1042/BCJ20210201
PMID: 34198322
قاعدة البيانات: MEDLINE
الوصف
تدمد:1470-8728
DOI:10.1042/BCJ20210201