دورية أكاديمية
Transcriptomic Analysis of Changes in Gene Expression During Flowering Induction in Sugarcane Under Controlled Photoperiodic Conditions.
| العنوان: | Transcriptomic Analysis of Changes in Gene Expression During Flowering Induction in Sugarcane Under Controlled Photoperiodic Conditions. |
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| المؤلفون: | Manechini JRV; Laboratório de Biologia de Sistemas, Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil., Santos PHDS; Departamento de Genética e Melhoramento de Plantas, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual de São Paulo (UNESP), Jaboticabal, Brazil., Romanel E; Laboratório de Genômica de Plantas e Bioenergia (PGEMBL), Departamento de Biotecnologia, Escola de Engenharia de Lorena (EEL), Universidade de São Paulo (USP), Lorena, Brazil., Brito MDS; Instituto de Ciência e Tecnologia, Universidade Federal de São Paulo (UNIFESP), São José dos Campos, Brazil., Scarpari MS; Centro de Cana, Instituto Agronômico de Campinas (IAC), Ribeirão Preto, Brazil., Jackson S; School of Life Sciences, The University of Warwick, Coventry, United Kingdom., Pinto LR; Departamento de Genética e Melhoramento de Plantas, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual de São Paulo (UNESP), Jaboticabal, Brazil.; Centro de Cana, Instituto Agronômico de Campinas (IAC), Ribeirão Preto, Brazil., Vicentini R; Laboratório de Biologia de Sistemas, Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil. |
| المصدر: | Frontiers in plant science [Front Plant Sci] 2021 Jun 15; Vol. 12, pp. 635784. Date of Electronic Publication: 2021 Jun 15 (Print Publication: 2021). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101568200 Publication Model: eCollection Cited Medium: Print ISSN: 1664-462X (Print) Linking ISSN: 1664462X NLM ISO Abbreviation: Front Plant Sci Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: Lausanne : Frontiers Research Foundation, 2010- |
| مستخلص: | Flowering is of utmost relevance for the agricultural productivity of the sugarcane bioeconomy, but data and knowledge of the genetic mechanisms underlying its photoperiodic induction are still scarce. An understanding of the molecular mechanisms that regulate the transition from vegetative to reproductive growth in sugarcane could provide better control of flowering for breeding. This study aimed to investigate the transcriptome of +1 mature leaves of a sugarcane cultivar subjected to florally inductive and non-inductive photoperiodic treatments to identify gene expression patterns and molecular regulatory modules. We identified 7,083 differentially expressed (DE) genes, of which 5,623 showed significant identity to other plant genes. Functional group analysis showed differential regulation of important metabolic pathways involved in plant development, such as plant hormones (i.e., cytokinin, gibberellin, and abscisic acid), light reactions, and photorespiration. Gene ontology enrichment analysis revealed evidence of upregulated processes and functions related to the response to abiotic stress, photoprotection, photosynthesis, light harvesting, and pigment biosynthesis, whereas important categories related to growth and vegetative development of plants, such as plant organ morphogenesis, shoot system development, macromolecule metabolic process, and lignin biosynthesis, were downregulated. Also, out of 76 sugarcane transcripts considered putative orthologs to flowering genes from other plants (such as Arabidopsis thaliana , Oryza sativa , and Sorghum bicolor ), 21 transcripts were DE. Nine DE genes related to flowering and response to photoperiod were analyzed either at mature or spindle leaves at two development stages corresponding to the early stage of induction and inflorescence primordia formation. Finally, we report a set of flowering-induced long non-coding RNAs and describe their level of conservation to other crops, many of which showed expression patterns correlated against those in the functionally grouped gene network. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2021 Manechini, Santos, Romanel, Brito, Scarpari, Jackson, Pinto and Vicentini.) |
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| فهرسة مساهمة: | Keywords: artificial induction; flowering; photoperiodism; sugarcane; transcriptome |
| تواريخ الأحداث: | Date Created: 20210702 Latest Revision: 20210703 |
| رمز التحديث: | 20221213 |
| مُعرف محوري في PubMed: | PMC8239368 |
| DOI: | 10.3389/fpls.2021.635784 |
| PMID: | 34211482 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1664-462X |
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| DOI: | 10.3389/fpls.2021.635784 |