دورية أكاديمية

COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes.

التفاصيل البيبلوغرافية
العنوان: COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes.
المؤلفون: Jenner AL; Sainte-Justine University Hospital Research Centre, Montréal, Québec, Canada.; Department of Mathematics and Statistics, Université de Montréal, Montréal, Québec, Canada., Aogo RA; Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, United States of America., Alfonso S; Department of Physiology, McGill University, Montréal, Québec, Canada., Crowe V; Department of Mathematics and Statistics, Concordia University, Montréal, Québec, Canada., Deng X; Sainte-Justine University Hospital Research Centre, Montréal, Québec, Canada.; Department of Mathematics and Statistics, Université de Montréal, Montréal, Québec, Canada., Smith AP; Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, United States of America., Morel PA; Department of Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America., Davis CL; Natural Science Division, Pepperdine University, Malibu, California, United States of America., Smith AM; Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee, United States of America., Craig M; Sainte-Justine University Hospital Research Centre, Montréal, Québec, Canada.; Department of Mathematics and Statistics, Université de Montréal, Montréal, Québec, Canada.; Department of Physiology, McGill University, Montréal, Québec, Canada.
المصدر: PLoS pathogens [PLoS Pathog] 2021 Jul 14; Vol. 17 (7), pp. e1009753. Date of Electronic Publication: 2021 Jul 14 (Print Publication: 2021).
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science, c2005-
مواضيع طبية MeSH: Models, Immunological* , SARS-CoV-2*/immunology, COVID-19/*immunology, Biomarkers/metabolism ; CD8-Positive T-Lymphocytes/immunology ; COVID-19/virology ; Cohort Studies ; Computational Biology ; Computer Simulation ; Disease Susceptibility/immunology ; Host Microbial Interactions/immunology ; Humans ; Immunity, Innate ; Immunosuppression Therapy ; Interferons/metabolism ; Interleukin-6/metabolism ; Macrophages/immunology ; Pandemics ; Severity of Illness Index ; User-Computer Interface
مستخلص: To understand the diversity of immune responses to SARS-CoV-2 and distinguish features that predispose individuals to severe COVID-19, we developed a mechanistic, within-host mathematical model and virtual patient cohort. Our results suggest that virtual patients with low production rates of infected cell derived IFN subsequently experienced highly inflammatory disease phenotypes, compared to those with early and robust IFN responses. In these in silico patients, the maximum concentration of IL-6 was also a major predictor of CD8+ T cell depletion. Our analyses predicted that individuals with severe COVID-19 also have accelerated monocyte-to-macrophage differentiation mediated by increased IL-6 and reduced type I IFN signalling. Together, these findings suggest biomarkers driving the development of severe COVID-19 and support early interventions aimed at reducing inflammation.
Competing Interests: The authors have declared that no competing interests exist.
التعليقات: Update of: bioRxiv. 2021 Jan 06;:. (PMID: 33442689)
References: Nat Med. 2020 Aug;26(8):1200-1204. (PMID: 32555424)
Clin Infect Dis. 2020 Jul 28;71(15):762-768. (PMID: 32161940)
PLoS Comput Biol. 2020 Dec 21;16(12):e1008451. (PMID: 33347439)
Math Biosci Eng. 2015 Aug;12(4):841-58. (PMID: 25974336)
J Immunother Cancer. 2021 Feb;9(2):. (PMID: 33608375)
J Immunol. 2006 Apr 15;176(8):4675-81. (PMID: 16585560)
Nature. 2020 Mar;579(7798):270-273. (PMID: 32015507)
Rev Med Interne. 2002 Nov;23 Suppl 4:449s-458s. (PMID: 12481400)
Immunity. 2011 Aug 26;35(2):161-8. (PMID: 21867926)
Nat Rev Immunol. 2008 Jul;8(7):559-68. (PMID: 18575461)
J Clin Invest. 2019 Jul 29;129(9):3625-3639. (PMID: 31355779)
Nat Commun. 2020 Nov 26;11(1):6013. (PMID: 33243994)
Nature. 2021 Apr;592(7852):116-121. (PMID: 33106671)
PLoS Pathog. 2020 Jul 29;16(7):e1008737. (PMID: 32726355)
Virus Res. 2013 Jan;171(1):1-7. (PMID: 23178588)
Antiviral Res. 2020 Jul;179:104811. (PMID: 32360182)
Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11585-11590. (PMID: 30348790)
Mol Cell Pediatr. 2016 Dec;3(1):29. (PMID: 27480877)
Cytometry B Clin Cytom. 2003 Mar;52(1):32-6. (PMID: 12599179)
Cell Host Microbe. 2016 Feb 10;19(2):181-93. (PMID: 26867177)
PLoS Comput Biol. 2019 Nov 27;15(11):e1007495. (PMID: 31774808)
Biochim Biophys Acta. 2011 May;1813(5):878-88. (PMID: 21296109)
Growth Factors. 1988;1(1):41-9. (PMID: 2483336)
J Exp Med. 1991 Apr 1;173(4):923-30. (PMID: 2007858)
Nat Immunol. 2000 Dec;1(6):510-4. (PMID: 11101873)
One Health. 2016 Dec 23;3:11-16. (PMID: 28616497)
J Virol. 2020 Nov 9;94(23):. (PMID: 32938761)
Immunity. 2017 Sep 19;47(3):582-596.e6. (PMID: 28930664)
Front Immunol. 2018 Aug 28;9:1922. (PMID: 30210491)
FEBS J. 2017 Apr;284(7):1021-1039. (PMID: 27863012)
Toxicol Pathol. 2007 Jun;35(4):495-516. (PMID: 17562483)
Signal Transduct Target Ther. 2020 Dec 28;5(1):299. (PMID: 33372174)
Autoimmun Rev. 2020 Jul;19(7):102567. (PMID: 32376392)
Nat Commun. 2019 Jul 19;10(1):3229. (PMID: 31324779)
J Allergy Clin Immunol. 2020 Jul;146(1):206-208.e2. (PMID: 32360285)
Cancers (Basel). 2020 Jul 21;12(7):. (PMID: 32708264)
Front Microbiol. 2018 Jul 10;9:1554. (PMID: 30042759)
Lancet Public Health. 2021 May;6(5):e335-e345. (PMID: 33857453)
J Biol Chem. 2008 Oct 3;283(40):27200-7. (PMID: 18650419)
Dev Comp Immunol. 2004 May 3;28(5):509-54. (PMID: 15062647)
J Infect Dis. 2022 Aug 24;226(2):278-286. (PMID: 32710762)
Nature. 2020 May;581(7809):465-469. (PMID: 32235945)
J Virol. 2013 Mar;87(6):3261-70. (PMID: 23302870)
Cell Res. 2006 Feb;16(2):126-33. (PMID: 16474424)
Sci Adv. 2020 Nov 20;6(47):. (PMID: 33097472)
J Immunol. 1989 Oct 15;143(8):2514-9. (PMID: 2571638)
Leukemia. 1990 Jan;4(1):29-36. (PMID: 2153263)
Chaos. 2020 Dec;30(12):123128. (PMID: 33380031)
Arch Intern Med. 2006 Sep 18;166(16):1725-31. (PMID: 16983050)
PLoS One. 2016 Feb 26;11(2):e0150568. (PMID: 26918620)
J Theor Biol. 2007 May 7;246(1):33-69. (PMID: 17270220)
Immunity. 2001 Oct;15(4):557-67. (PMID: 11672538)
Blood. 2016 Oct 13;128(15):1989-1991. (PMID: 27578816)
Am Rev Respir Dis. 1982 Aug;126(2):332-7. (PMID: 7103258)
Science. 2020 Oct 23;370(6515):. (PMID: 32972996)
Science. 2020 Sep 4;369(6508):. (PMID: 32669297)
Pharm Res. 2002 Oct;19(10):1537-43. (PMID: 12425473)
Curr Pathobiol Rep. 2020;8(4):149-161. (PMID: 32989410)
J Gen Virol. 1987 Jun;68 ( Pt 6):1749-53. (PMID: 3035067)
Lancet Infect Dis. 2020 Apr;20(4):400-402. (PMID: 32113509)
Clin Exp Allergy. 2011 Oct;41(10):1386-91. (PMID: 21645137)
J Infect Dis. 2015 Dec 1;212(11):1701-10. (PMID: 25943206)
Cell Host Microbe. 2020 Jun 10;27(6):870-878. (PMID: 32464097)
Cell Rep. 2020 Sep 22;32(12):108185. (PMID: 32941788)
Nat Med. 2020 Oct;26(10):1623-1635. (PMID: 32807934)
Free Radic Biol Med. 1999 Jul;27(1-2):234-40. (PMID: 10443941)
Cell Host Microbe. 2020 Sep 9;28(3):455-464.e2. (PMID: 32707096)
Sci Adv. 2021 Nov 26;7(48):eabj5629. (PMID: 34826237)
Cancer Res. 2004 Dec 15;64(24):8795-9. (PMID: 15604233)
Immunol Rev. 2018 Sep;285(1):97-112. (PMID: 30129197)
FEBS Lett. 1985 Jun 3;185(1):9-13. (PMID: 3838944)
J Allergy Clin Immunol. 2020 Jul;146(1):128-136.e4. (PMID: 32425269)
CPT Pharmacometrics Syst Pharmacol. 2016 Mar;5(3):140-6. (PMID: 27069777)
Bull Math Biol. 2016 Dec;78(12):2304-2357. (PMID: 27324993)
J Paediatr Child Health. 2001 Apr;37(2):146-51. (PMID: 11328469)
Adv Appl Microbiol. 2010;73:83-101. (PMID: 20800760)
Ann Clin Lab Sci. 2008 Autumn;38(4):331-7. (PMID: 18988925)
Nat Commun. 2020 Jan 10;11(1):222. (PMID: 31924756)
Wiley Interdiscip Rev Syst Biol Med. 2011 Jul-Aug;3(4):429-45. (PMID: 21197654)
JAMA. 2020 Apr 21;323(15):1488-1494. (PMID: 32125362)
J Leukoc Biol. 2015 Oct;98(4):557-64. (PMID: 26160849)
Nat Commun. 2020 Apr 24;11(1):2070. (PMID: 32332765)
Proc Natl Acad Sci U S A. 1994 Sep 27;91(20):9602-6. (PMID: 7524081)
Ann N Y Acad Sci. 1989;557:388-93; discussion 394-5. (PMID: 2786701)
Analyst. 2018 Jul 7;143(13):3148-3155. (PMID: 29878008)
EMBO Mol Med. 2020 Jul 7;12(7):e12421. (PMID: 32428990)
Bull Math Biol. 2020 Jul 31;82(8):104. (PMID: 32737602)
Ann Rheum Dis. 2020 Oct;79(10):1277-1285. (PMID: 32620597)
Nature. 2020 Aug;584(7821):463-469. (PMID: 32717743)
Lancet Infect Dis. 2021 Sep;21(9):1246-1256. (PMID: 33857406)
Crit Rev Immunol. 2011;31(6):459-74. (PMID: 22321107)
J Leukoc Biol. 1990 Mar;47(3):275-82. (PMID: 1689760)
J Exp Med. 2017 Jul 3;214(7):1913-1923. (PMID: 28606987)
Cell. 2021 Apr 1;184(7):1858-1864.e10. (PMID: 33631096)
Cell. 2020 May 28;181(5):1036-1045.e9. (PMID: 32416070)
EBioMedicine. 2020 May;55:102763. (PMID: 32361250)
J Virol. 2015 Mar;89(5):2672-83. (PMID: 25520513)
J Clin Invest. 2021 Apr 15;131(8):. (PMID: 33635833)
Cell Death Discov. 2019 Feb 8;5:65. (PMID: 30774993)
In Vitro Cell Dev Biol. 1988 Mar;24(3):155-65. (PMID: 2450859)
Lancet. 2020 Mar 28;395(10229):1033-1034. (PMID: 32192578)
J Exp Med. 2020 Sep 7;217(9):. (PMID: 32678431)
J Immunol. 2018 Nov 15;201(10):2934-2946. (PMID: 30315140)
Nature. 2020 Sep;585(7824):268-272. (PMID: 32396922)
J Exp Med. 2017 May 1;214(5):1547-1555. (PMID: 28420733)
Proc Natl Acad Sci U S A. 2019 Aug 27;116(35):17393-17398. (PMID: 31413198)
Arterioscler Thromb Vasc Biol. 2017 Jan;37(1):35-42. (PMID: 27765768)
bioRxiv. 2021 Feb 10;:. (PMID: 33594364)
Clin Infect Dis. 2020 Sep 12;71(6):1410-1412. (PMID: 32301957)
J Biol Chem. 1992 Mar 25;267(9):5739-42. (PMID: 1556093)
Immunology. 2002 Aug;106(4):537-48. (PMID: 12153517)
Blood. 1988 Apr;71(4):997-1002. (PMID: 2833334)
Antimicrob Agents Chemother. 2020 Aug 20;64(9):. (PMID: 32661006)
JCI Insight. 2020 Jul 9;5(13):. (PMID: 32501293)
Nature. 2020 Mar;579(7798):265-269. (PMID: 32015508)
معلومات مُعتمدة: R01 AI139088 United States AI NIAID NIH HHS
المشرفين على المادة: 0 (Biomarkers)
0 (IL6 protein, human)
0 (Interleukin-6)
9008-11-1 (Interferons)
تواريخ الأحداث: Date Created: 20210714 Date Completed: 20210805 Latest Revision: 20231102
رمز التحديث: 20231102
مُعرف محوري في PubMed: PMC8312984
DOI: 10.1371/journal.ppat.1009753
PMID: 34260666
قاعدة البيانات: MEDLINE
الوصف
تدمد:1553-7374
DOI:10.1371/journal.ppat.1009753