دورية أكاديمية
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Whole-Genome Resequencing Points to Candidate DNA Loci Affecting Body Temperature under Cold Stress in Siberian Cattle Populations.

التفاصيل البيبلوغرافية
العنوان: Whole-Genome Resequencing Points to Candidate DNA Loci Affecting Body Temperature under Cold Stress in Siberian Cattle Populations.
المؤلفون: Igoshin A; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Yudin N; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia., Aitnazarov R; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Yurchenko AA; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Larkin DM; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.; Department of Comparative Biomedical Sciences, Royal Veterinary College, University of London, London NW1 0TU, UK.
المصدر: Life (Basel, Switzerland) [Life (Basel)] 2021 Sep 13; Vol. 11 (9). Date of Electronic Publication: 2021 Sep 13.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101580444 Publication Model: Electronic Cited Medium: Print ISSN: 2075-1729 (Print) Linking ISSN: 20751729 NLM ISO Abbreviation: Life (Basel) Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI AG, 2011-
مستخلص: Despite the economic importance of creating cold resilient cattle breeds, our knowledge of the genetic basis of adaptation to cold environments in cattle is still scarce compared to information on other economically important traits. Herein, using whole-genome resequencing of animals showing contrasting phenotypes on temperature maintenance under acute cold stress combined with the existing SNP (single nucleotide polymorphism) functional annotations, we report chromosomal regions and candidate SNPs controlling body temperature in the Siberian cattle populations. The SNP ranking procedure based on regional F ST calculations, functional annotations, and the allele frequency difference between cold-tolerant and cold-sensitive groups of animals pointed to multiple candidate genes. Among these, GRIA4 , COX17 , MAATS1 , UPK1B , IFNGR1 , DDX23 , PPT1 , THBS1 , CCL5 , ATF1 , PLA1A , PRKAG1, and NR1I2 were previously related to thermal adaptations in cattle. Other genes, for example KMT2D and SNRPA1, are known to be related to thermogenesis in mice and cold adaptation in common carp, respectively. This work could be useful for cattle breeding strategies in countries with harsh climates, including the Russian Federation.
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معلومات مُعتمدة: 19-76-20026 Russian Science Foundation
فهرسة مساهمة: Keywords: body temperature maintenance; cattle; cold adaptation; whole-genome resequencing
تواريخ الأحداث: Date Created: 20210928 Latest Revision: 20240403
رمز التحديث: 20240403
مُعرف محوري في PubMed: PMC8467296
DOI: 10.3390/life11090959
PMID: 34575108
قاعدة البيانات: MEDLINE
الوصف
تدمد:2075-1729
DOI:10.3390/life11090959