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Persistence and expansion of cryptic endangered red wolf genomic ancestry along the American Gulf coast.

التفاصيل البيبلوغرافية
العنوان: Persistence and expansion of cryptic endangered red wolf genomic ancestry along the American Gulf coast.
المؤلفون: vonHoldt BM; Ecology & Evolutionary Biology, Princeton University, Princeton, New Jersey, USA., Brzeski KE; College of Forest Resources and Environment Science, Michigan Technological University, Houghton, Michigan, USA., Aardema ML; Department of Biology, Montclair State University, Montclair, New Jersey, USA.; Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, USA., Schell CJ; Department of Environmental Science, Policy, and Management, University of California Berkeley, Berkeley, California, USA., Rutledge LY; Biology Department, Trent University, Peterborough, Ontario, Canada., Fain SR; USFWS, Clark R. Bavin National Forensics Laboratory, Ashland, Oregon, USA., Shutt AC; The Canid Project, Louisiana, USA., Linderholm A; Department of Anthropology, Texas A&M University, College Station, Texas, USA., Murphy WJ; Veterinary Integrative Biosciences, Texas A&M University, College Station, Texas, USA.
المصدر: Molecular ecology [Mol Ecol] 2022 Nov; Vol. 31 (21), pp. 5440-5454. Date of Electronic Publication: 2021 Oct 10.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Blackwell Scientific Publications Country of Publication: England NLM ID: 9214478 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-294X (Electronic) Linking ISSN: 09621083 NLM ISO Abbreviation: Mol Ecol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Oxford, UK : Blackwell Scientific Publications, c1992-
مواضيع طبية MeSH: Wolves*/genetics , Coyotes*/genetics , Canidae*, Animals ; United States ; Hybridization, Genetic ; Genome/genetics ; Genomics
مستخلص: Admixture and introgression play a critical role in adaptation and genetic rescue that has only recently gained a deeper appreciation. Here, we explored the geographical and genomic landscape of cryptic ancestry of the endangered red wolf that persists within the genome of a ubiquitous sister taxon, the coyote, all while the red wolf has been extinct in the wild since the early 1980s. We assessed admixture across 120,621 single nucleotiode polymorphism (SNP) loci genotyped in 293 canid genomes. We found support for increased red wolf ancestry along a west-to-east gradient across the southern United States associated with historical admixture in the past 100 years. Southwestern Louisiana and southeastern Texas, the geographical zone where the last red wolves were known prior to extinction in the wild, contained the highest and oldest levels of red wolf ancestry. Further, given the paucity of inferences based on chromosome types, we compared patterns of ancestry on the X chromosome and autosomes. We additionally aimed to explore the relationship between admixture timing and recombination rate variation to investigate gene flow events. We found that X-linked regions of low recombination rates were depleted of introgression, relative to the autosomes, consistent with the large X effect and enrichment with loci involved in maintaining reproductive isolation. Recombination rate was positively correlated with red wolf ancestry across coyote genomes, consistent with theoretical predictions. The geographical and genomic extent of cryptic red wolf ancestry can provide novel genomic resources for recovery plans targeting the conservation of the endangered red wolf.
(© 2021 John Wiley & Sons Ltd.)
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فهرسة مساهمة: Keywords: RADseq; X chromosome; admixture; ancestry; recombination; red wolf
تواريخ الأحداث: Date Created: 20210929 Date Completed: 20221027 Latest Revision: 20221223
رمز التحديث: 20240628
DOI: 10.1111/mec.16200
PMID: 34585803
قاعدة البيانات: MEDLINE
الوصف
تدمد:1365-294X
DOI:10.1111/mec.16200