Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe.

التفاصيل البيبلوغرافية
العنوان:	Next-generation phylogeography resolves post-glacial colonization patterns in a widespread carnivore, the red fox (Vulpes vulpes), in Europe.
المؤلفون:	McDevitt AD; School of Science, Engineering and Environment, University of Salford, Salford, UK., Coscia I; School of Science, Engineering and Environment, University of Salford, Salford, UK., Browett SS; School of Science, Engineering and Environment, University of Salford, Salford, UK., Ruiz-González A; Department of Zoology and Animal Cell Biology, University of the Basque Country, UPV/EHU, Vitoria-Gasteiz, Spain., Statham MJ; Department of Population Health and Reproduction, School of Veterinary Medicine, Mammalian Ecology and Conservation Unit, Center for Veterinary Genetics, University of California, Davis, California, USA., Ruczyńska I; Mammal Research Institute, Polish Academy of Sciences, Białowieża, Poland., Roberts L; School of Science, Engineering and Environment, University of Salford, Salford, UK., Stojak J; Mammal Research Institute, Polish Academy of Sciences, Białowieża, Poland., Frantz AC; Musée National d'Histoire Naturelle, Luxembourg, Luxembourg., Norén K; Department of Zoology, Stockholm University, Stockholm, Sweden., Ågren EO; Department of Pathology and Wildlife Diseases, National Veterinary Institute, Uppsala, Sweden., Learmount J; National Wildlife Management Centre, Animal and Plant Health Agency, Sand Hutton, UK., Basto M; Department of Animal Biology, Faculty of Sciences, CE3C - Centre for Ecology, Evolution and Environmental Changes, University of Lisbon, Lisbon, Portugal., Fernandes C; Department of Animal Biology, Faculty of Sciences, CE3C - Centre for Ecology, Evolution and Environmental Changes, University of Lisbon, Lisbon, Portugal., Stuart P; Biological and Pharmaceutical Sciences Department, Institute of Technology Tralee, Kerry, Ireland., Tosh DG; National Museums of Northern Ireland, Hollywood, UK., Sindicic M; Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia., Andreanszky T; Croatian Veterinary Institute, Rijeka, Croatia., Isomursu M; Finnish Food Authority, Veterinary Bacteriology and Pathology Research Unit, Oulu, Finland., Panek M; Polish Hunting Association, Czempiń, Poland., Korolev A; Institute of Biology of Komi Science, Remote Centre of the Ural Branch of the Russian Academy of Sciences, Syktyvkar, Russia., Okhlopkov IM; Institute of Biological Problems of Cryolithozone, Siberian Branch of Russian Academy of Sciences, Yakutsk, Russia., Saveljev AP; Department of Animal Ecology, Russian Research Institute of Game Management and Fur Farming, Kirov, Russia., Pokorny B; Environmental Protection College, Velenje, Slovenia., Flajšman K; Slovenian Forestry Institute, Ljubljana, Slovenia., Harrison SWR; School of Animal Rural & Environmental Sciences, Nottingham Trent University, Southwell, UK., Lobkov V; Faculty of Biology, Odessa I.I. Mechnykov National University, Odessa, Ukraine., Ćirović D; Faculty of Biology, University of Belgrade, Belgrade, Serbia., Mullins J; Mammal Research Institute, Polish Academy of Sciences, Białowieża, Poland., Pertoldi C; Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark., Randi E; Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.; Department of Biological, Geological and Environmental Sciences, University of Bologna, Bologna, Italy., Sacks BN; Department of Population Health and Reproduction, School of Veterinary Medicine, Mammalian Ecology and Conservation Unit, Center for Veterinary Genetics, University of California, Davis, California, USA., Kowalczyk R; Mammal Research Institute, Polish Academy of Sciences, Białowieża, Poland., Wójcik JM; Mammal Research Institute, Polish Academy of Sciences, Białowieża, Poland.
المصدر:	Molecular ecology [Mol Ecol] 2022 Feb; Vol. 31 (3), pp. 993-1006. Date of Electronic Publication: 2021 Nov 26.
نوع المنشور:	Journal Article; Research Support, Non-U.S. Gov't
اللغة:	English
بيانات الدورية:	Publisher: Blackwell Scientific Publications Country of Publication: England NLM ID: 9214478 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-294X (Electronic) Linking ISSN: 09621083 NLM ISO Abbreviation: Mol Ecol Subsets: MEDLINE
أسماء مطبوعة:	Original Publication: Oxford, UK : Blackwell Scientific Publications, c1992-
مواضيع طبية MeSH:	Foxes/genetics , Genetic Variation, Animals ; Bayes Theorem ; Europe ; Humans ; Phylogeny ; Phylogeography
مستخلص:	Carnivores tend to exhibit a lack of (or less pronounced) genetic structure at continental scales in both a geographic and temporal sense and this can confound the identification of post-glacial colonization patterns in this group. In this study we used genome-wide data (using genotyping by sequencing [GBS]) to reconstruct the phylogeographic history of a widespread carnivore, the red fox (Vulpes vulpes), by investigating broad-scale patterns of genomic variation, differentiation and admixture amongst contemporary populations in Europe. Using 15,003 single nucleotide polymorphisms (SNPs) from 524 individuals allowed us to identify the importance of refugial regions for the red fox in terms of endemism (e.g., Iberia). In addition, we tested multiple post-glacial recolonization scenarios of previously glaciated regions during the Last Glacial Maximum using an Approximate Bayesian Computation (ABC) approach that were unresolved from previous studies. This allowed us to identify the role of admixture from multiple source population post-Younger Dryas in the case of Scandinavia and ancient land-bridges in the colonization of the British Isles. A natural colonization of Ireland was deemed more likely than an ancient human-mediated introduction as has previously been proposed and potentially points to a larger mammalian community on the island in the early post-glacial period. Using genome-wide data has allowed us to tease apart broad-scale patterns of structure and diversity in a widespread carnivore in Europe that was not evident from using more limited marker sets and provides a foundation for next-generation phylogeographic studies in other non-model species. (© 2021 John Wiley & Sons Ltd.)
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معلومات مُعتمدة:	DEC-2012/05/B/NZ8/00976 Narodowe Centrum Nauki
فهرسة مساهمة:	Keywords: Ireland; Last Glacial Maximum; Scandinavia; approximate Bayesian computation; genotyping-by-sequencing; mammal; single nucleotide polymorphisms
تواريخ الأحداث:	Date Created: 20211114 Date Completed: 20220131 Latest Revision: 20220131
رمز التحديث:	20231215
DOI:	10.1111/mec.16276
PMID:	34775636
قاعدة البيانات:	MEDLINE

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تدمد:	1365-294X
DOI:	10.1111/mec.16276