دورية أكاديمية
أعرض في EDS

Fecal microbiome profiles of neonatal dairy calves with varying severities of gastrointestinal disease.

التفاصيل البيبلوغرافية
العنوان: Fecal microbiome profiles of neonatal dairy calves with varying severities of gastrointestinal disease.
المؤلفون: Slanzon GS; Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America., Ridenhour BJ; Department of Mathematics and Statistical Science, College of Science, University of Idaho, Moscow, Idaho, United States of America., Moore DA; Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America., Sischo WM; Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America., Parrish LM; Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America., Trombetta SC; Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America., McConnel CS; Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America.
المصدر: PloS one [PLoS One] 2022 Jan 04; Vol. 17 (1), pp. e0262317. Date of Electronic Publication: 2022 Jan 04 (Print Publication: 2022).
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science
مواضيع طبية MeSH: Bacteria/*isolation & purification , Bacterial Infections/*complications , Cattle Diseases/*pathology , Feces/*microbiology , Gastrointestinal Diseases/*pathology , Gastrointestinal Diseases/*veterinary, Animals ; Animals, Newborn ; Bacteria/classification ; Bacteria/pathogenicity ; Bacterial Infections/microbiology ; Cattle ; Cattle Diseases/microbiology ; Gastrointestinal Diseases/microbiology
مستخلص: Gastrointestinal disease (GI) is the most common illness in pre-weaned dairy calves. Studies have associated the fecal microbiome composition with health status, but it remains unclear how the microbiome changes across different levels of GI disease and breeds. Our objective was to associate the clinical symptoms of GI disease with the fecal microbiome. Fecal samples were collected from calves (n = 167) of different breeds (Holstein, Jersey, Jersey-cross and beef-cross) from 4-21 d of age. Daily clinical evaluations assessed health status. Calves with loose or watery feces were diagnosed with diarrhea and classified as bright-sick (BS) or depressed-sick (DS) according to behavior. Calves with normal or semiformed feces and no clinical illness were classified as healthy (H). One hundred and three fecal samples were obtained from consistently healthy calves and 64 samples were from calves with diarrhea (n = 39 BS; n = 25 DS). The V3-V4 region of 16S rRNA gene was sequenced and analyzed. Differences were identified by a linear-mixed effects model with a negative binomial error. DS and Jersey calves had a higher relative abundance of Streptococcus gallolyticus relative to H Holstein calves. In addition, DS calves had a lower relative abundance of Bifidobacterium longum and an enrichment of Escherichia coli. Species of the genus Lactobacillus, such as an unclassified Lactobacillus, Lactobacillus reuteri, and Lactobacillus salivarius were enriched in calves with GI disease. Moreover, we created a model to predict GI disease based on the fecal microbiome composition. The presence of Eggerthella lenta, Bifidobacterium longum, and Collinsella aerofaciens were associated with a healthy clinical outcome. Although lactobacilli are often associated with beneficial probiotic properties, the presence of E. coli and Lactobacillus species had the highest coefficients positively associated with GI disease prediction. Our results indicate that there are differences in the fecal microbiome of calves associated with GI disease severity and breed specificities.
Competing Interests: The authors have declared that no competing interests exist.
References: J Vet Med Sci. 2010 Dec;72(12):1551-5. (PMID: 20675964)
Vet Clin North Am Food Anim Pract. 2009 Mar;25(1):101-20, vi. (PMID: 19174285)
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6. (PMID: 23193283)
Vet Rec. 2015 Dec 12;177(23):598. (PMID: 26645721)
Vet Clin North Am Food Anim Pract. 2019 Nov;35(3):485-505. (PMID: 31590899)
Front Microbiol. 2019 May 16;10:1093. (PMID: 31156599)
J Dairy Sci. 2016 Jun;99(6):4647-4655. (PMID: 27060812)
Benef Microbes. 2020 Sep 1;11(5):477-488. (PMID: 32877228)
Front Vet Sci. 2021 Jul 08;8:650150. (PMID: 34307516)
Front Vet Sci. 2019 Jun 06;6:159. (PMID: 31245388)
Brief Bioinform. 2021 Jan 18;22(1):178-193. (PMID: 31848574)
Nucleic Acids Res. 1996 Jan 1;24(1):82-5. (PMID: 8594608)
J Dairy Sci. 2014;97(6):3838-44. (PMID: 24704239)
PLoS One. 2013 Apr 30;8(4):e63157. (PMID: 23646192)
Vet Clin North Am Food Anim Pract. 2012 Nov;28(3):465-81. (PMID: 23101671)
Vet Clin North Am Food Anim Pract. 2012 Nov;28(3):419-41. (PMID: 23101669)
J Dairy Sci. 2016 Apr;99(4):3199-3216. (PMID: 26805993)
J Stat Softw. 2010;33(1):1-22. (PMID: 20808728)
Front Microbiol. 2016 Aug 03;7:1206. (PMID: 27536291)
BMC Bioinformatics. 2022 Sep 16;23(1):380. (PMID: 36114453)
Appl Environ Microbiol. 2019 Mar 6;85(6):. (PMID: 30658973)
J Dairy Sci. 2017 Apr;100(4):2471-2481. (PMID: 28131576)
Sci Rep. 2020 Oct 19;10(1):17712. (PMID: 33077862)
Nat Methods. 2016 Jul;13(7):581-3. (PMID: 27214047)
Anim Sci J. 2013 Feb;84(2):101-5. (PMID: 23384350)
PLoS One. 2013 Apr 22;8(4):e61217. (PMID: 23630581)
J Dairy Sci. 2019 Jun;102(6):5389-5402. (PMID: 31005326)
Ecol Lett. 2006 Jun;9(6):683-93. (PMID: 16706913)
J Vet Intern Med. 2017 May;31(3):928-939. (PMID: 28390070)
Front Cell Infect Microbiol. 2012 Jun 22;2:86. (PMID: 22919677)
Anim Microbiome. 2020 Sep 7;2(1):31. (PMID: 33499967)
BMC Bioinformatics. 2015 Oct 08;16:324. (PMID: 26450747)
Prev Vet Med. 2015 Jan 1;118(1):64-70. (PMID: 25475689)
J Anim Physiol Anim Nutr (Berl). 2013 Dec;97(6):1091-103. (PMID: 23205592)
PLoS One. 2017 Jan 10;12(1):e0169851. (PMID: 28072880)
Acta Physiol (Oxf). 2016 Aug;217(4):300-10. (PMID: 27096537)
Sci Rep. 2018 Jul 11;8(1):10437. (PMID: 29993024)
Comput Struct Biotechnol J. 2021 Jan 26;19:989-1001. (PMID: 33613865)
Inflamm Bowel Dis. 2016 May;22(5):1137-50. (PMID: 27070911)
PLoS One. 2018 Jan 26;13(1):e0191599. (PMID: 29373601)
Asian-Australas J Anim Sci. 2017 Oct;30(10):1456-1463. (PMID: 28231697)
Aliment Pharmacol Ther. 2005 Sep 15;22(6):495-512. (PMID: 16167966)
J Dairy Sci. 1995 Dec;78(12):2838-46. (PMID: 8675766)
Front Microbiol. 2021 Mar 18;12:601061. (PMID: 33868186)
J Vet Sci. 2014;15(1):1-17. (PMID: 24378583)
Appl Environ Microbiol. 1997 Feb;63(2):506-12. (PMID: 9023929)
Front Microbiol. 2016 Aug 19;7:1204. (PMID: 27594848)
Microb Biotechnol. 2019 Nov;12(6):1097-1100. (PMID: 31284329)
J Vet Intern Med. 2004 Jan-Feb;18(1):8-17. (PMID: 14765726)
Microbiome. 2020 Jul 22;8(1):110. (PMID: 32698902)
J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712)
PLoS One. 2012;7(9):e46399. (PMID: 23029509)
J Dairy Sci. 2021 Jun;104(6):7225-7232. (PMID: 33663859)
J Dairy Sci. 2016 Dec;99(12):9703-9715. (PMID: 27720148)
تواريخ الأحداث: Date Created: 20220104 Date Completed: 20220221 Latest Revision: 20240405
رمز التحديث: 20240405
مُعرف محوري في PubMed: PMC8726473
DOI: 10.1371/journal.pone.0262317
PMID: 34982792
قاعدة البيانات: MEDLINE
الوصف
تدمد:1932-6203
DOI:10.1371/journal.pone.0262317