دورية أكاديمية
أعرض في EDS

Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype.

التفاصيل البيبلوغرافية
العنوان: Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype.
المؤلفون: Pichot C; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Djari A; Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Toulouse INP, 31320 Auzeville-Tolosane, France., Tran J; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Verdenaud M; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Marande W; INRAE, Centre National de Ressources Génomiques Végétales, 31326 Castanet-Tolosan, France., Huneau C; INRAE-UCA UMR 1095 GDEC, 5 chemin de Beaulieu, 63000 Clermont-Ferrand, France., Gautier V; INRAE-UCA UMR 1095 GDEC, 5 chemin de Beaulieu, 63000 Clermont-Ferrand, France., Latrasse D; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Arribat S; INRAE, Centre National de Ressources Génomiques Végétales, 31326 Castanet-Tolosan, France., Sommard V; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Troadec C; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Poncet C; INRAE-UCA UMR 1095 GDEC, 5 chemin de Beaulieu, 63000 Clermont-Ferrand, France., Bendahmane M; Laboratoire Reproduction et Développement des Plantes, INRAE, CNRS, Université Lyon 1-ENSL, Ecole Normale Supérieure de Lyon, 69364 Lyon Cedex 07, France., Szecsi J; Laboratoire Reproduction et Développement des Plantes, INRAE, CNRS, Université Lyon 1-ENSL, Ecole Normale Supérieure de Lyon, 69364 Lyon Cedex 07, France., Dogimont C; INRAE GAFL, Génétique et Amélioration des Fruits et Légumes, 84143 Montfavet, France., Salse J; INRAE-UCA UMR 1095 GDEC, 5 chemin de Beaulieu, 63000 Clermont-Ferrand, France., Benhamed M; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Zouine M; Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Toulouse INP, 31320 Auzeville-Tolosane, France., Boualem A; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France., Bendahmane A; Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.
المصدر: IScience [iScience] 2021 Dec 25; Vol. 25 (1), pp. 103696. Date of Electronic Publication: 2021 Dec 25 (Print Publication: 2022).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101724038 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-0042 (Electronic) Linking ISSN: 25890042 NLM ISO Abbreviation: iScience Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: [Cambridge, MA] : Cell Press, [2018]-
مستخلص: Cucumis melo displays a large diversity of horticultural groups with cantaloupe melon the most cultivated type. Using a combination of single-molecule sequencing, 10X Genomics link-reads, high-density optical and genetic maps, and chromosome conformation capture (Hi-C), we assembled a chromosome scale C. melo var. cantalupensis Charentais mono genome. Integration of RNA-seq, MeDip-seq, ChIP-seq, and Hi-C data revealed a widespread compartmentalization of the melon genome, segregating constitutive heterochromatin and euchromatin. Genome-wide comparative and evolutionary analysis between melon botanical groups identified Charentais mono genome increasingly more divergent from Harukei-3 ( reticulatus ), Payzawat ( inodorus ), and HS (ssp. agrestis ) genomes. To assess the paleohistory of the Cucurbitaceae , we reconstructed the ancestral Cucurbitaceae karyotype and compared it to sequenced cucurbit genomes. In contrast to other species that experienced massive chromosome shuffling, melon has retained the ancestral genome structure. We provide comprehensive genomic resources and new insights in the diversity of melon horticultural groups and evolution of cucurbits.
Competing Interests: The authors declare no competing interests.
(© 2022 The Authors.)
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فهرسة مساهمة: Keywords: genomics; omics; plant biology; plant evolution
تواريخ الأحداث: Date Created: 20220121 Latest Revision: 20220122
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC8760558
DOI: 10.1016/j.isci.2021.103696
PMID: 35059606
قاعدة البيانات: MEDLINE
الوصف
تدمد:2589-0042
DOI:10.1016/j.isci.2021.103696