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Genomic survey of edible cockle ( Cerastoderma edule ) in the Northeast Atlantic: A baseline for sustainable management of its wild resources.

التفاصيل البيبلوغرافية
العنوان: Genomic survey of edible cockle ( Cerastoderma edule ) in the Northeast Atlantic: A baseline for sustainable management of its wild resources.
المؤلفون: Vera M; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain.; Institute of Aquaculture Universidade de Santiago de Compostela Santiago de Compostela Spain., Maroso F; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain.; Department of Life Sciences and Biotechnologies University of Ferrara Ferrara Italy., Wilmes SB; School of Ocean Sciences Marine Centre Wales Bangor University Menai Bridge UK., Hermida M; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain.; Institute of Aquaculture Universidade de Santiago de Compostela Santiago de Compostela Spain., Blanco A; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain., Fernández C; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain.; Institute of Aquaculture Universidade de Santiago de Compostela Santiago de Compostela Spain., Groves E; School of Ocean Sciences Marine Centre Wales Bangor University Menai Bridge UK., Malham SK; School of Ocean Sciences Marine Centre Wales Bangor University Menai Bridge UK., Bouza C; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain.; Institute of Aquaculture Universidade de Santiago de Compostela Santiago de Compostela Spain., Robins PE; School of Ocean Sciences Marine Centre Wales Bangor University Menai Bridge UK., Martínez P; Department of Zoology, Genetics and Physical Anthropology ACUIGEN Group Faculty of Veterinary Universidade de Santiago de Compostela, Campus of Lugo Lugo Spain.; Institute of Aquaculture Universidade de Santiago de Compostela Santiago de Compostela Spain.
مؤلفون مشاركون: Cockle’s Consortium
المصدر: Evolutionary applications [Evol Appl] 2022 Jan 25; Vol. 15 (2), pp. 262-285. Date of Electronic Publication: 2022 Jan 25 (Print Publication: 2022).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Blackwell Pub Country of Publication: England NLM ID: 101461828 Publication Model: eCollection Cited Medium: Print ISSN: 1752-4571 (Print) Linking ISSN: 17524571 NLM ISO Abbreviation: Evol Appl Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: [Oxford] : Blackwell Pub.
مستخلص: Knowledge on correlations between environmental factors and genome divergence between populations of marine species is crucial for sustainable management of fisheries and wild populations. The edible cockle ( Cerastoderma edule ) is a marine bivalve distributed along the Northeast Atlantic coast of Europe and is an important resource from both commercial and ecological perspectives. We performed a population genomics screening using 2b-RAD genotyping on 9309 SNPs localized in the cockle's genome on a sample of 536 specimens pertaining to 14 beds in the Northeast Atlantic Ocean to analyse the genetic structure with regard to environmental variables. Larval dispersal modelling considering species behaviour and interannual/interseasonal variation in ocean conditions was carried out as an essential background to which compare genetic information. Cockle populations in the Northeast Atlantic displayed low but significant geographical differentiation between populations ( F ST  = 0.0240; p  < 0.001), albeit not across generations. We identified 742 and 36 outlier SNPs related to divergent and balancing selection in all the geographical scenarios inspected, and sea temperature and salinity were the main environmental correlates suggested. Highly significant linkage disequilibrium was detected at specific genomic regions against the very low values observed across the whole genome. Two main genetic groups were identified, northwards and southwards of French Brittany. Larval dispersal modelling suggested a barrier for larval dispersal linked to the Ushant front that could explain these two genetic clusters. Further genetic subdivision was observed using outlier loci and considering larval advection. The northern group was divided into the Irish/Celtic Seas and the English Channel/North Sea, while the southern group was divided into three subgroups. This information represents the baseline for the management of cockles, designing conservation strategies, founding broodstock for depleted beds and producing suitable seed for aquaculture production.
Competing Interests: Authors have no conflict of interest to declare.
(© 2021 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd.)
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فهرسة مساهمة: Keywords: 2b‐RAD; adaptive variation; fisheries management; genetic structure; larval dispersal modelling
سلسلة جزيئية: Dryad 10.5061/dryad.kh189326p
تواريخ الأحداث: Date Created: 20220302 Latest Revision: 20240824
رمز التحديث: 20240826
مُعرف محوري في PubMed: PMC8867702
DOI: 10.1111/eva.13340
PMID: 35233247
قاعدة البيانات: MEDLINE
الوصف
تدمد:1752-4571
DOI:10.1111/eva.13340