دورية أكاديمية

Phylogeography of ancient and modern brown bears from eastern Eurasia.

التفاصيل البيبلوغرافية
العنوان: Phylogeography of ancient and modern brown bears from eastern Eurasia.
المؤلفون: Molodtseva AS; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Makunin AI; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Salomashkina VV; A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia., Kichigin IG; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Vorobieva NV; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Vasiliev SK; Institute of Archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Shunkov MV; Institute of Archaeology and Ethnography, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Tishkin AA; Altai State University, Barnaul, Russia., Grushin SP; Altai State University, Barnaul, Russia., Anijalg P; Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Tammeleht E; Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Keis M; Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Boeskorov GG; Geological Museum, Institute of Diamond and Precious Metals Geology, Siberian Branch of the Russian Academy of Sciences, Yakutsk, Russia., Mamaev N; Institute for Biological Problems of Cryolithozone, Siberian Branch of the Russian Academy of Sciences, Yakutsk, Russia., Okhlopkov IM; Institute for Biological Problems of Cryolithozone, Siberian Branch of the Russian Academy of Sciences, Yakutsk, Russia., Kryukov AP; Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of the Russian Academy of Sciences, Vladivostok, Russia., Lyapunova EA; N. K. Koltzov Institute of Developmental Biology, Russian Academy of Sciences, Moscow, Russia., Kholodova MV; A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia., Seryodkin IV; Pacific Institute of Geography, Far East Branch, Russian Academy of Sciences, Vladivostok, Russia., Saarma U; Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia., Trifonov VA; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia., Graphodatsky AS; Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
المصدر: Biological journal of the Linnean Society. Linnean Society of London [Biol J Linn Soc Lond] 2022 Feb 25; Vol. 135 (4), pp. 722-733. Date of Electronic Publication: 2022 Feb 25 (Print Publication: 2022).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Published for the Linnean Society of London by Academic Press Country of Publication: England NLM ID: 9877437 Publication Model: eCollection Cited Medium: Print ISSN: 0024-4066 (Print) Linking ISSN: 00244066 NLM ISO Abbreviation: Biol J Linn Soc Lond Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: [London] Published for the Linnean Society of London by Academic Press.
مستخلص: The brown bear ( Ursus arctos ) is an iconic carnivoran species of the Northern Hemisphere. Its population history has been studied extensively using mitochondrial markers, which demonstrated signatures of multiple waves of migration, arguably connected with glaciation periods. Among Eurasian brown bears, Siberian populations remain understudied. We have sequenced complete mitochondrial genomes of four ancient (~4.5-40 kya) bears from South Siberia and 19 modern bears from South Siberia and the Russian Far East. Reconstruction of phylogenetic relationships between haplotypes and evaluation of modern population structure have demonstrated that all the studied samples belong to the most widespread Eurasian clade 3. One of the ancient haplotypes takes a basal position relative to the whole of clade 3; the second is basal to the haplogroup 3a (the most common subclade), and two others belong to clades 3a1 and 3b. Modern Siberian bears retain at least some of this diversity; apart from the most common haplogroup 3a, we demonstrate the presence of clade 3b, which was previously found mainly in mainland Eurasia and Northern Japan. Our findings highlight the importance of South Siberia as a refugium for northern Eurasian brown bears and further corroborate the hypothesis of several waves of migration in the Pleistocene.
(© The Author(s) 2022. Published by Oxford University Press on behalf of The Linnean Society of London. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
References: Nat Ecol Evol. 2018 Oct;2(10):1563-1570. (PMID: 30150744)
Virus Evol. 2018 Jun 08;4(1):vey016. (PMID: 29942656)
Bioinformatics. 2009 Jun 1;25(11):1451-2. (PMID: 19346325)
Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5053-7. (PMID: 20194737)
Bioinformatics. 2014 May 1;30(9):1312-3. (PMID: 24451623)
Mol Ecol. 2009 May;18(9):1963-79. (PMID: 19434812)
PLoS One. 2020 Nov 12;15(11):e0241997. (PMID: 33180850)
Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1651-4. (PMID: 10677513)
Mol Biol Evol. 2017 Mar 1;34(3):772-773. (PMID: 28013191)
BMC Res Notes. 2012 Jul 02;5:337. (PMID: 22748135)
Mol Biol Evol. 2013 Apr;30(4):772-80. (PMID: 23329690)
Science. 2002 Mar 22;295(5563):2267-70. (PMID: 11910112)
Mol Ecol. 2007 Jan;16(2):401-13. (PMID: 17217353)
Mol Biol Evol. 1999 May;16(5):676-84. (PMID: 10335661)
Genome Res. 2010 Sep;20(9):1297-303. (PMID: 20644199)
Izv Akad Nauk Ser Biol. 2014 Jan-Feb;(1):30-9. (PMID: 25735154)
Mol Biol Evol. 2013 Jul;30(7):1644-52. (PMID: 23619144)
PLoS One. 2019 Aug 13;14(8):e0220746. (PMID: 31408475)
Proc Biol Sci. 1994 Mar 22;255(1344):195-200. (PMID: 8022838)
Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9589-E9597. (PMID: 29078308)
Mol Ecol. 2021 Nov 8;:. (PMID: 34748674)
Nat Protoc. 2014 May;9(5):1056-82. (PMID: 24722405)
PLoS One. 2010 Nov 16;5(11):e14004. (PMID: 21103372)
Mol Ecol Resour. 2010 May;10(3):564-7. (PMID: 21565059)
Bioinformatics. 2013 Jul 01;29(13):1682-4. (PMID: 23613487)
Mol Biol Evol. 2002 Mar;19(3):357-61. (PMID: 11861896)
Syst Biol. 2012 May;61(3):539-42. (PMID: 22357727)
Mol Ecol. 2005 Apr;14(4):1191-6. (PMID: 15773945)
Sci Rep. 2019 Mar 14;9(1):4462. (PMID: 30872771)
Genetics. 1992 Jun;131(2):479-91. (PMID: 1644282)
Mol Ecol. 2008 Apr;17(8):1962-70. (PMID: 18363668)
Mol Ecol. 2006 Dec;15(14):4477-85. (PMID: 17107477)
Mol Ecol. 2010 Dec;19(24):5359-70. (PMID: 21044194)
Mol Ecol. 2015 Jul;24(13):3441-54. (PMID: 26042479)
Genetika. 2013 Dec;49(12):1392-7. (PMID: 25438600)
PLoS One. 2013;8(3):e57754. (PMID: 23483925)
PLoS One. 2013 Nov 18;8(11):e81012. (PMID: 24260529)
Mol Cells. 2008 Dec 31;26(6):566-75. (PMID: 18852526)
معلومات مُعتمدة: United Kingdom WT_ Wellcome Trust; 206194 United Kingdom WT_ Wellcome Trust
فهرسة مساهمة: Keywords: Denisova; ancient DNA; glacial refugium; mitochondrial genome; population structure
تواريخ الأحداث: Date Created: 20220401 Latest Revision: 20230226
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC8943912
DOI: 10.1093/biolinnean/blac009
PMID: 35359699
قاعدة البيانات: MEDLINE
الوصف
تدمد:0024-4066
DOI:10.1093/biolinnean/blac009