دورية أكاديمية
Comparative Genomics of Seasonal Senescence in Forest Trees.
| العنوان: | Comparative Genomics of Seasonal Senescence in Forest Trees. |
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| المؤلفون: | Batalova AY; Department of Genomics and Bioinformatics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia., Putintseva YA; Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia., Sadovsky MG; Institute of Computational Modelling, Russian Academy of Sciences, Siberian Branch, 660036 Krasnoyarsk, Russia.; V. F. Voino-Yasenetsky Krasnoyarsk State Medical University, 660022 Krasnoyarsk, Russia.; Federal Siberian Research Clinical Center, Federal Medical-Biological Agency, 660037 Krasnoyarsk, Russia., Krutovsky KV; Department of Genomics and Bioinformatics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia.; Department of Forest Genetics and Forest Tree Breeding, Georg-August University of Göttingen, 37077 Göttingen, Germany.; Center for Integrated Breeding Research, Georg-August University of Göttingen, 37075 Göttingen, Germany.; Laboratory of Population Genetics, N. I. Vavilov Institute of General Genetics, Russian Academy of Sciences, 119333 Moscow, Russia.; Scientific and Methodological Center, G. F. Morozov Voronezh State University of Forestry and Technologies, 394087 Voronezh, Russia. |
| المصدر: | International journal of molecular sciences [Int J Mol Sci] 2022 Mar 29; Vol. 23 (7). Date of Electronic Publication: 2022 Mar 29. |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: Basel, Switzerland : MDPI, [2000- |
| مواضيع طبية MeSH: | Larix*/genetics , Magnoliopsida* , Tracheophyta*, Forests ; Genomics ; Seasons ; Trees/genetics |
| مستخلص: | In the course of evolution, both flowering plants and some gymnosperms have developed such an adaptation to winter and unfavorable living conditions as deciduousness. Of particular interest is Siberian larch ( Larix sibirica Ledeb.), which is the only species in the pine family (Pinaceae) with a seasonal deciduousness. New generation sequencing technologies make it possible to study this phenomenon at the genomic level and to reveal the genetic mechanisms of leaf and needle aging in angiosperms and gymnosperms. Using a comparative analysis of the genomes of evergreen and deciduous trees, it was found that the genes that control EXORDIUM LIKE 2 (EXL2) and DORMANCY-ASSOCIATED PROTEIN 1 (DRM1) proteins are most represented in Siberian larch, while an excess of genes that control proteins acting as immune receptors were found in evergreens. Orthologs from the family of genes that control leucine-rich repeat receptor-like kinases (LRR-RLK) contributed mostly to the distinction between evergreens and deciduous plants. |
| References: | Mol Biol Evol. 2013 Apr;30(4):772-80. (PMID: 23329690) PLoS Biol. 2008 Sep 23;6(9):e230. (PMID: 18816164) J Plant Res. 2006 Mar;119(2):115-23. (PMID: 16463203) BMC Bioinformatics. 2019 Feb 5;20(Suppl 1):37. (PMID: 30717661) Plant Cell Rep. 2015 Mar;34(3):447-55. (PMID: 25533478) Nat Methods. 2015 Jan;12(1):59-60. (PMID: 25402007) Plant Cell. 2019 Feb;31(2):430-443. (PMID: 30712008) J Exp Bot. 2018 Feb 12;69(4):787-799. (PMID: 28992051) Plants (Basel). 2020 Apr 13;9(4):. (PMID: 32294898) Plant J. 2004 Jun;38(5):810-22. (PMID: 15144382) Genome Biol. 2006;7(4):212. (PMID: 16677430) Nat Biotechnol. 2010 May;28(5):511-5. (PMID: 20436464) Proc Natl Acad Sci U S A. 2020 Jan 28;117(4):2201-2210. (PMID: 31932448) Plant Cell. 2010 Apr;22(4):1104-17. (PMID: 20363771) PLoS One. 2016 Jan 11;11(1):e0146826. (PMID: 26752684) Plant Cell Physiol. 2013 Oct;54(10):1660-72. (PMID: 23926065) Plant J. 2002 Aug;31(3):331-40. (PMID: 12164812) Bioinformatics. 2014 May 1;30(9):1236-40. (PMID: 24451626) Plant Mol Biol. 2003 Jan;51(1):21-37. (PMID: 12602888) Plant J. 2015 Nov;84(3):597-610. (PMID: 26407000) Trends Genet. 2000 Jun;16(6):276-7. (PMID: 10827456) Plant Cell Physiol. 2011 Apr;52(4):651-62. (PMID: 21382977) Plant J. 2010 Jul;63(2):179-88. (PMID: 20409006) Syst Biol. 2012 Dec 1;61(6):1061-7. (PMID: 22780991) BMC Bioinformatics. 2007 Nov 22;8:460. (PMID: 18034891) Plant Signal Behav. 2012 Jan;7(1):22-7. (PMID: 22301961) J Cell Sci. 2013 Nov 1;126(Pt 21):4823-33. (PMID: 24144694) J Exp Bot. 2010 Mar;61(5):1419-30. (PMID: 20164142) Mol Plant Microbe Interact. 2015 Sep;28(9):1032-48. (PMID: 26011556) PLoS One. 2019 Aug 28;14(8):e0221226. (PMID: 31461469) Genome Biol. 2019 Nov 14;20(1):238. (PMID: 31727128) Science. 2009 Feb 20;323(5917):1053-7. (PMID: 19229035) Plant Mol Biol. 2007 Sep;65(1-2):63-76. (PMID: 17587183) Plant Cell. 2013 Sep;25(9):3311-28. (PMID: 24064769) Elife. 2016 Nov 22;5:. (PMID: 27873573) Plant J. 2016 Dec;88(6):1058-1070. (PMID: 27549386) BMC Bioinformatics. 2009 Dec 15;10:421. (PMID: 20003500) Mol Biol Evol. 2017 Aug 1;34(8):2115-2122. (PMID: 28460117) Brief Bioinform. 2011 Sep;12(5):449-62. (PMID: 21873635) |
| معلومات مُعتمدة: | 14.Y26.31.0004 Government of the Russian Federation |
| فهرسة مساهمة: | Keywords: Larix sibirica; comparative genomics; forest trees; seasonal leaf senescence |
| تواريخ الأحداث: | Date Created: 20220412 Date Completed: 20220413 Latest Revision: 20220416 |
| رمز التحديث: | 20231215 |
| مُعرف محوري في PubMed: | PMC8998842 |
| DOI: | 10.3390/ijms23073761 |
| PMID: | 35409113 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1422-0067 |
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| DOI: | 10.3390/ijms23073761 |