دورية أكاديمية
أعرض في EDS

Genomic and Transcriptomic Characterization of Atypical Recurrent Flank Alopecia in the Cesky Fousek.

التفاصيل البيبلوغرافية
العنوان: Genomic and Transcriptomic Characterization of Atypical Recurrent Flank Alopecia in the Cesky Fousek.
المؤلفون: Neradilová S; Department of Animal Science and Food Processing, Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, 16500 Prague, Czech Republic., Schauer AM; Institute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.; DermFocus, University of Bern, 3012 Bern, Switzerland., Hayward JJ; Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA., Brunner MAT; Institute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.; DermFocus, University of Bern, 3012 Bern, Switzerland., Bohutínská M; Department of Botany, Faculty of Science, Charles University, 12800 Prague, Czech Republic., Jagannathan V; Institute of Genetics, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland., Connell LB; Molecular & Biomedical Sciences and School of Marine Sciences, University of Maine, Orono, ME 04469, USA., Boyko AR; Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853, USA., Welle MM; Institute of Animal Pathology, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland.; DermFocus, University of Bern, 3012 Bern, Switzerland., Černá Bolfíková B; Department of Animal Science and Food Processing, Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, 16500 Prague, Czech Republic.
المصدر: Genes [Genes (Basel)] 2022 Apr 07; Vol. 13 (4). Date of Electronic Publication: 2022 Apr 07.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel : MDPI
مواضيع طبية MeSH: Genome-Wide Association Study* , Transcriptome*/genetics, Alopecia/genetics ; Alopecia/pathology ; Alopecia/veterinary ; Animals ; Dogs ; Hair Follicle ; Skin/pathology
مستخلص: Non-inflammatory alopecia is a frequent skin problem in dogs, causing damaged coat integrity and compromised appearance of affected individuals. In this study, we examined the Cesky Fousek breed, which displays atypical recurrent flank alopecia (aRFA) at a high frequency. This type of alopecia can be quite severe and is characterized by seasonal episodes of well demarcated alopecic areas without hyperpigmentation. The genetic component responsible for aRFA remains unknown. Thus, here we aimed to identify variants involved in aRFA using a combination of histological, genomic, and transcriptomic data. We showed that aRFA is histologically similar to recurrent flank alopecia, characterized by a lack of anagen hair follicles and the presence of severely shortened telogen or kenogen hair follicles. We performed a genome-wide association study (GWAS) using 216 dogs phenotyped for aRFA and identified associations on chromosomes 19, 8, 30, 36, and 21, highlighting 144 candidate genes, which suggests a polygenic basis for aRFA. By comparing the skin cell transcription pattern of six aRFA and five control dogs, we identified 236 strongly differentially expressed genes (DEGs). We showed that the GWAS genes associated with aRFA are often predicted to interact with DEGs, suggesting their joint contribution to the development of the disease. Together, these genes affect four major metabolic pathways connected to aRFA: collagen formation, muscle structure/contraction, lipid metabolism, and the immune system.
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فهرسة مساهمة: Keywords: Cesky Fousek; GWAS; RNA-seq; atypical recurrent flank alopecia; canine alopecia; differential gene expression; dog; skin biopsies
تواريخ الأحداث: Date Created: 20220423 Date Completed: 20220426 Latest Revision: 20220716
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC9033119
DOI: 10.3390/genes13040650
PMID: 35456456
قاعدة البيانات: MEDLINE
الوصف
تدمد:2073-4425
DOI:10.3390/genes13040650