دورية أكاديمية
أعرض في EDS

NoLiTiA: An Open-Source Toolbox for Non-linear Time Series Analysis.

التفاصيل البيبلوغرافية
العنوان: NoLiTiA: An Open-Source Toolbox for Non-linear Time Series Analysis.
المؤلفون: Weber I; Department of Neurology, Philipps University of Marburg, Marburg, Germany., Oehrn CR; Department of Neurology, Philipps University of Marburg, Marburg, Germany.; Center for Mind, Brain and Behavior, Philipps University of Marburg, Marburg, Germany.
المصدر: Frontiers in neuroinformatics [Front Neuroinform] 2022 Jun 24; Vol. 16, pp. 876012. Date of Electronic Publication: 2022 Jun 24 (Print Publication: 2022).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101477957 Publication Model: eCollection Cited Medium: Print ISSN: 1662-5196 (Print) Linking ISSN: 16625196 NLM ISO Abbreviation: Front Neuroinform Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne, Switzerland : Frontiers Research Foundation, 2007-
مستخلص: In many scientific fields including neuroscience, climatology or physics, complex relationships can be described most parsimoniously by non-linear mechanics. Despite their relevance, many neuroscientists still apply linear estimates in order to evaluate complex interactions. This is partially due to the lack of a comprehensive compilation of non-linear methods. Available packages mostly specialize in only one aspect of non-linear time-series analysis and most often require some coding proficiency to use. Here, we introduce NoLiTiA, a free open-source MATLAB toolbox for non-linear time series analysis. In comparison to other currently available non-linear packages, NoLiTiA offers (1) an implementation of a broad range of classic and recently developed methods, (2) an implementation of newly proposed spatially and time-resolved recurrence amplitude analysis and (3) an intuitive environment accessible even to users with little coding experience due to a graphical user interface and batch-editor. The core methodology derives from three distinct fields of complex systems theory, including dynamical systems theory, recurrence quantification analysis and information theory. Besides established methodology including estimation of dynamic invariants like Lyapunov exponents and entropy-based measures, such as active information storage, we include recent developments of quantifying time-resolved aperiodic oscillations. In general, the toolbox will make non-linear methods accessible to the broad neuroscientific community engaged in time series processing.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
(Copyright © 2022 Weber and Oehrn.)
References: Sci Rep. 2017 Nov 9;7(1):15127. (PMID: 29123213)
Comput Biol Med. 2022 Apr;143:105288. (PMID: 35168083)
BMC Bioinformatics. 2009 Dec 28;10:448. (PMID: 20038296)
Epilepsy Res. 2001 May;44(2-3):129-40. (PMID: 11325569)
Clin Neurophysiol. 1999 Oct;110(10):1801-13. (PMID: 10574295)
Phys Rev Lett. 1996 Jun 17;76(25):4705-4708. (PMID: 10061360)
Nat Rev Neurosci. 2009 Mar;10(3):173-85. (PMID: 19229240)
Epilepsy Res. 2011 Sep;96(1-2):29-38. (PMID: 21616643)
Comput Methods Programs Biomed. 2013 Mar;109(3):339-45. (PMID: 23122719)
Sci Rep. 2021 Jan 12;11(1):759. (PMID: 33437004)
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 May;65(5 Pt 2):056201. (PMID: 12059674)
Neuroimage. 2018 Feb 15;167:297-308. (PMID: 29175200)
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jun;69(6 Pt 2):066138. (PMID: 15244698)
Clin Neurophysiol. 2005 Oct;116(10):2266-301. (PMID: 16115797)
J Neurosci Methods. 2017 Oct 01;290:85-94. (PMID: 28734799)
Int J Neural Syst. 2015 Dec;25(8):1550032. (PMID: 26560459)
PLoS One. 2016 Dec 12;11(12):e0167351. (PMID: 27941990)
J Gen Physiol. 1960 May;43:867-96. (PMID: 13823315)
Curr Biol. 2015 Aug 31;25(17):2307-13. (PMID: 26299515)
Science. 2004 Jun 25;304(5679):1926-9. (PMID: 15218136)
Comput Intell Neurosci. 2011;2011:156869. (PMID: 21253357)
Chaos. 2015 Nov;25(11):113101. (PMID: 26627561)
Biol Cybern. 2000 Nov;83(5):391-7. (PMID: 11073203)
Chaos. 1999 Jun;9(2):413-435. (PMID: 12779839)
J Neurosci. 2011 Aug 10;31(32):11728-32. (PMID: 21832202)
Seizure. 2019 Oct;71:258-269. (PMID: 31479850)
Phys Rev A Gen Phys. 1989 Oct 1;40(7):4028-4031. (PMID: 9902623)
Comput Biol Med. 2019 Aug;111:103331. (PMID: 31284155)
Front Physiol. 2017 Sep 01;8:633. (PMID: 28919862)
Neuroimage. 2020 Apr 1;209:116518. (PMID: 31911251)
Trends Cogn Sci. 2017 Feb;21(2):137-149. (PMID: 28063662)
Biol Cybern. 1999 Nov;81(5-6):415-24. (PMID: 10592017)
Neuroimage. 2014 Nov 1;101:796-808. (PMID: 25003817)
Chaos. 2018 Jun;28(6):063112. (PMID: 29960390)
Sci Rep. 2019 Oct 11;9(1):14714. (PMID: 31604988)
Biomed Eng Online. 2007 Jun 26;6:23. (PMID: 17594480)
Behav Res Methods. 2022 Apr;54(2):649-662. (PMID: 34341962)
BMC Neurosci. 2011 Nov 18;12:119. (PMID: 22098775)
Front Comput Neurosci. 2016 Aug 22;10:87. (PMID: 27597822)
Front Neuroinform. 2022 Mar 07;16:800116. (PMID: 35321152)
Chaos. 2015 Sep;25(9):097612. (PMID: 26428565)
C R Acad Sci III. 2001 Sep;324(9):773-93. (PMID: 11558325)
Psychophysiology. 1992 Mar;29(2):182-92. (PMID: 1635960)
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1994 Feb;49(2):R971-R974. (PMID: 9961411)
Chaos. 2019 Sep;29(9):093125. (PMID: 31575157)
Phys Rev Lett. 1996 Jul 22;77(4):635-638. (PMID: 10062864)
J Neurosci Methods. 1998 Aug 31;83(1):1-14. (PMID: 9765047)
Clin Neurophysiol. 2001 Jan;112(1):38-45. (PMID: 11137659)
Curr Biol. 2018 Sep 24;28(18):3016-3022.e4. (PMID: 30197086)
Phys Rev Lett. 1987 Aug 24;59(8):845-848. (PMID: 10035887)
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Aug;66(2 Pt 2):026702. (PMID: 12241313)
Brain Topogr. 1994 Winter;7(2):141-50. (PMID: 7696091)
Neuroimage. 2021 Oct 15;240:118383. (PMID: 34252525)
Comput Biol Med. 2022 May;144:105327. (PMID: 35303579)
Eur J Neurosci. 2010 Feb;31(3):491-8. (PMID: 20105231)
J Biol Phys. 1997 Mar;23(1):11-20. (PMID: 23345647)
Phys Rev A Gen Phys. 1986 Feb;33(2):1134-1140. (PMID: 9896728)
IEEE Trans Biomed Eng. 2018 Sep;65(9):1953-1963. (PMID: 29993397)
Phys Rev A Gen Phys. 1986 Sep;34(3):2427-2432. (PMID: 9897530)
Nature. 2018 Jul;559(7715):535-545. (PMID: 30046070)
Exp Neurol. 2010 Jul;224(1):234-40. (PMID: 20353774)
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 2):036222. (PMID: 17500784)
Front Bioeng Biotechnol. 2020 Sep 08;8:1006. (PMID: 33015003)
J Neurosci. 2009 Jul 1;29(26):8512-24. (PMID: 19571142)
Neuroimage. 2014 Jan 1;84:1018-31. (PMID: 24071524)
Biol Cybern. 1989;62(1):55-62. (PMID: 2590678)
Phys Rev A. 1992 Mar 15;45(6):3403-3411. (PMID: 9907388)
Comput Biol Med. 2019 Jul;110:93-107. (PMID: 31132528)
Clin Neurophysiol. 2001 Dec;112(12):2274-80. (PMID: 11738199)
Clin Neurophysiol. 2017 Jul;128(7):1299-1307. (PMID: 28554147)
J Comput Neurosci. 2011 Feb;30(1):1-5. (PMID: 21279429)
J Neurosci. 2011 Apr 27;31(17):6353-61. (PMID: 21525275)
فهرسة مساهمة: Keywords: dynamical system; information theory; neural time series; non-linear; recurrence analysis
تواريخ الأحداث: Date Created: 20220711 Latest Revision: 20231102
رمز التحديث: 20231102
مُعرف محوري في PubMed: PMC9263366
DOI: 10.3389/fninf.2022.876012
PMID: 35811996
قاعدة البيانات: MEDLINE
الوصف
تدمد:1662-5196
DOI:10.3389/fninf.2022.876012