دورية أكاديمية
أعرض في EDS

Evolution of the Noncoding Features of Sea Snake Mitochondrial Genomes within Elapidae.

التفاصيل البيبلوغرافية
العنوان: Evolution of the Noncoding Features of Sea Snake Mitochondrial Genomes within Elapidae.
المؤلفون: Xiaokaiti X; Department of Information and Basic Science and Research Center for Biological Diversity, Graduate School of Science, Nagoya City University, Nagoya 467-8501, Japan., Hashiguchi Y; Department of Biology, Faculty of Medicine, Osaka Medical and Pharmaceutical University, Takatsuki 569-0801, Japan., Ota H; Institute of Natural and Environmental Sciences, University of Hyogo, and Museum of Nature and Human Activities, Sanda 669-1546, Japan., Kumazawa Y; Department of Information and Basic Science and Research Center for Biological Diversity, Graduate School of Science, Nagoya City University, Nagoya 467-8501, Japan.
المصدر: Genes [Genes (Basel)] 2022 Aug 17; Vol. 13 (8). Date of Electronic Publication: 2022 Aug 17.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel : MDPI
مواضيع طبية MeSH: Genome, Mitochondrial*/genetics , Hydrophiidae*/genetics, Animals ; Elapidae/genetics ; Phylogeny ; RNA, Transfer/genetics
مستخلص: Mitochondrial genomes of four elapid snakes (three marine species [ Emydocephalus ijimae , Hydrophis ornatus , and Hydrophis melanocephalus ], and one terrestrial species [ Sinomicrurus japonicus ]) were completely sequenced by a combination of Sanger sequencing, next-generation sequencing and Nanopore sequencing. Nanopore sequencing was especially effective in accurately reading through long tandem repeats in these genomes. This led us to show that major noncoding regions in the mitochondrial genomes of those three sea snakes contain considerably long tandem duplications, unlike the mitochondrial genomes previously reported for same and other sea snake species. We also found a transposition of the light-strand replication origin within a tRNA gene cluster for the three sea snakes. This change can be explained by the Tandem Duplication-Random Loss model, which was further supported by remnant intervening sequences between tRNA genes. Mitochondrial genomes of true snakes (Alethinophidia) have been shown to contain duplicate major noncoding regions, each of which includes the control region necessary for regulating the heavy-strand replication and transcription from both strands. However, the control region completely disappeared from one of the two major noncoding regions for two Hydrophis sea snakes, posing evolutionary questions on the roles of duplicate control regions in snake mitochondrial genomes. The timing and molecular mechanisms for these changes are discussed based on the elapid phylogeny.
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فهرسة مساهمة: Keywords: Nanopore sequencing; control region; light-strand replication origin; tandem repeat
المشرفين على المادة: 9014-25-9 (RNA, Transfer)
تواريخ الأحداث: Date Created: 20220826 Date Completed: 20220829 Latest Revision: 20220914
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC9407768
DOI: 10.3390/genes13081470
PMID: 36011381
قاعدة البيانات: MEDLINE
الوصف
تدمد:2073-4425
DOI:10.3390/genes13081470