دورية أكاديمية
أعرض في EDS

The genus Serratia revisited by genomics.

التفاصيل البيبلوغرافية
العنوان: The genus Serratia revisited by genomics.
المؤلفون: Williams DJ; Division of Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee, UK.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK., Grimont PAD; Unité Biodiversité des Bactéries Pathogènes Emergentes, INSERM Unité 389, Institut Pasteur, Paris, France., Cazares A; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Grimont F; Unité Biodiversité des Bactéries Pathogènes Emergentes, INSERM Unité 389, Institut Pasteur, Paris, France., Ageron E; Unité Biodiversité des Bactéries Pathogènes Emergentes, INSERM Unité 389, Institut Pasteur, Paris, France.; Université Paris Cité, INSERM UMR-S1151, CNRS UMR-S8253, Institut Necker Enfants Malades, Paris, France., Pettigrew KA; School of Medicine, University of St Andrews, St Andrews, UK., Cazares D; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK., Njamkepo E; Institut Pasteur, Université de Paris, Unité des Bactéries Pathogènes Entériques, Paris, France., Weill FX; Institut Pasteur, Université de Paris, Unité des Bactéries Pathogènes Entériques, Paris, France., Heinz E; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.; Departments of Vector Biology and Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, UK., Holden MTG; School of Medicine, University of St Andrews, St Andrews, UK., Thomson NR; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK. nrt@sanger.ac.uk.; Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, UK. nrt@sanger.ac.uk., Coulthurst SJ; Division of Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee, UK. s.j.coulthurst@dundee.ac.uk.
المصدر: Nature communications [Nat Commun] 2022 Sep 03; Vol. 13 (1), pp. 5195. Date of Electronic Publication: 2022 Sep 03.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Nature Pub. Group
مواضيع طبية MeSH: Genome, Bacterial*/genetics , Genomics*, Phylogeny ; Plasmids ; Serratia/genetics
مستخلص: The genus Serratia has been studied for over a century and includes clinically-important and diverse environmental members. Despite this, there is a paucity of genomic information across the genus and a robust whole genome-based phylogenetic framework is lacking. Here, we have assembled and analysed a representative set of 664 genomes from across the genus, including 215 historic isolates originally used in defining the genus. Phylogenomic analysis of the genus reveals a clearly-defined population structure which displays deep divisions and aligns with ecological niche, as well as striking congruence between historical biochemical phenotyping data and contemporary genomics data. We highlight the genomic, phenotypic and plasmid diversity of Serratia, and provide evidence of different patterns of gene flow across the genus. Our work provides a framework for understanding the emergence of clinical and other lineages of Serratia.
(© 2022. The Author(s).)
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معلومات مُعتمدة: 220321 United Kingdom WT_ Wellcome Trust; NIHR200639 United Kingdom DH_ Department of Health; 104556 United Kingdom WT_ Wellcome Trust; 206194 United Kingdom WT_ Wellcome Trust; 109118 United Kingdom WT_ Wellcome Trust
سلسلة جزيئية: figshare 10.6084/m9.figshare.18051824
تواريخ الأحداث: Date Created: 20220903 Date Completed: 20220908 Latest Revision: 20230816
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC9440931
DOI: 10.1038/s41467-022-32929-2
PMID: 36057639
قاعدة البيانات: MEDLINE
الوصف
تدمد:2041-1723
DOI:10.1038/s41467-022-32929-2