دورية أكاديمية
Lineage BA.2 dominated the Omicron SARS-CoV-2 epidemic wave in the Philippines.
| العنوان: | Lineage BA.2 dominated the Omicron SARS-CoV-2 epidemic wave in the Philippines. |
|---|---|
| المؤلفون: | Li YT; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK., Polotan FGM; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Sotelo GIS; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Alpino APA; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Dolor AYM; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Tujan MAA; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Gomez MRR; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Onza OJT; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Chang AKT; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Bautista CT; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Carandang JC; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Yangzon MSL; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Pangilinan EAR; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Mantaring RJ; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Telles AJE; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Egana JMC; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Endozo JJS; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Cruz RPS; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Tablizo FA; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Yap JMC; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Maralit BA; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Ayes MEC; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., de la Paz EMC; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines.; National Institutes of Health, University of the Philippines Manila, 623 Pedro Gil Street, Ermita, Manila 1000, Philippine., Saloma CP; Philippine Genome Center, National Science Complex, U.P. Campus, University of the Philippines, A. Ma. Regidor Street, Quezon City, Metro Manila 1101, Philippines., Lim DR; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Dancel LLM; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Uy-Lumandas M; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Medado IAP; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Dizon TJR; Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa, Metro Manila 1781, Philippines., Hampson K; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK., Daldry S; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK., Hughes J; MRC-University of Glasgow Centre for Virus Research, Glasgow, UK., Brunker K; Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G12 8QQ, UK. |
| المصدر: | Virus evolution [Virus Evol] 2022 Aug 19; Vol. 8 (2), pp. veac078. Date of Electronic Publication: 2022 Aug 19 (Print Publication: 2022). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 101664675 Publication Model: eCollection Cited Medium: Print ISSN: 2057-1577 (Print) Linking ISSN: 20571577 NLM ISO Abbreviation: Virus Evol Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: Oxford : Oxford University Press, [2015]- |
| مستخلص: | The Omicron severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant led to a dramatic global epidemic wave following detection in South Africa in November 2021. The BA.1 Omicron lineage was dominant and responsible for most SARS-CoV-2 outbreaks in countries around the world during December 2021-January 2022, while other Omicron lineages, including BA.2, accounted for the minority of global isolates. Here, we describe the Omicron wave in the Philippines by analysing genomic data. Our results identify the presence of both BA.1 and BA.2 lineages in the Philippines in December 2021, before cases surged in January 2022. We infer that only the BA.2 lineage underwent sustained transmission in the country, with an estimated emergence around 18 November 2021 (95 per cent highest posterior density: 6-28 November), while despite multiple introductions, BA.1 transmission remained limited. These results suggest that the Philippines was one of the earliest areas affected by BA.2 and reiterate the importance of whole genome sequencing for monitoring outbreaks. (© The Author(s) 2022. Published by Oxford University Press.) |
| References: | Nat Methods. 2023 Apr;20(4):536-540. (PMID: 36823331) Infect Genet Evol. 2008 May;8(3):239-46. (PMID: 17921073) Nature. 2022 Mar;603(7902):679-686. (PMID: 35042229) Mol Biol Evol. 2020 May 1;37(5):1530-1534. (PMID: 32011700) Nature. 2022 Feb;602(7898):676-681. (PMID: 35016198) Syst Biol. 2019 Nov 1;68(6):1052-1061. (PMID: 31034053) Nature. 2021 May;593(7858):266-269. (PMID: 33767447) Euro Surveill. 2022 Mar;27(10):. (PMID: 35272746) Virus Evol. 2018 Jun 08;4(1):vey016. (PMID: 29942656) Syst Biol. 2018 Sep 1;67(5):901-904. (PMID: 29718447) Nat Rev Microbiol. 2021 Jul;19(7):409-424. (PMID: 34075212) Cell. 2022 Jun 9;185(12):2103-2115.e19. (PMID: 35568035) Bioinformatics. 2022 Mar 4;38(6):1735-1737. (PMID: 34954792) J Med Virol. 2022 May;94(5):1777-1779. (PMID: 34964502) Bioinformatics. 2018 Dec 1;34(23):4121-4123. (PMID: 29790939) Euro Surveill. 2017 Mar 30;22(13):. (PMID: 28382917) N Engl J Med. 2022 Feb 10;386(6):599-601. (PMID: 35030645) Science. 2021 Nov 19;374(6570):995-999. (PMID: 34648303) Nat Microbiol. 2020 Nov;5(11):1403-1407. (PMID: 32669681) |
| معلومات مُعتمدة: | MR/R025649/1 United Kingdom MRC_ Medical Research Council; MC_UU_12014/12 United Kingdom MRC_ Medical Research Council; MR/V035444/1 United Kingdom MRC_ Medical Research Council; United Kingdom WT_ Wellcome Trust; 207569/Z/17/Z United Kingdom WT_ Wellcome Trust |
| فهرسة مساهمة: | Keywords: Philippines; SARS-CoV-2; genomic epidemiology |
| تواريخ الأحداث: | Date Created: 20220912 Latest Revision: 20240214 |
| رمز التحديث: | 20240214 |
| مُعرف محوري في PubMed: | PMC9452094 |
| DOI: | 10.1093/ve/veac078 |
| PMID: | 36090771 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 2057-1577 |
|---|---|
| DOI: | 10.1093/ve/veac078 |