دورية أكاديمية
Delineating meta-quantitative trait loci for anthracnose resistance in common bean ( Phaseolus vulgaris L.).
العنوان: | Delineating meta-quantitative trait loci for anthracnose resistance in common bean ( Phaseolus vulgaris L.). |
---|---|
المؤلفون: | Shafi S; Division of Genetics and Plant Breeding, Faculty of Agriculture, SKUAST-Kashmir, Wadura, India., Saini DK; Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India., Khan MA; Division of Genetics and Plant Breeding, Faculty of Agriculture, SKUAST-Kashmir, Wadura, India., Bawa V; Division of Genetics & Plant Breeding, Faculty of Agriculture, SKUAST-Jammu, Chatha, Jammu and Kashmir, India., Choudhary N; Division of Genetics & Plant Breeding, Faculty of Agriculture, SKUAST-Jammu, Chatha, Jammu and Kashmir, India., Dar WA; Mountain Agriculture Research and Extension Station, SKUAST-Kashmir, Bandipora, Jammu and Kashmir, India., Pandey AK; College of Life Sciences, China Jiliang University, Hangzhou, China., Varshney RK; State Agricultural Biotechnology Centre, Centre for Crop & Food Innovation, Food Futures Institute, Murdoch University, Murdoch, WA, Australia., Mir RR; Division of Genetics and Plant Breeding, Faculty of Agriculture, SKUAST-Kashmir, Wadura, India. |
المصدر: | Frontiers in plant science [Front Plant Sci] 2022 Aug 25; Vol. 13, pp. 966339. Date of Electronic Publication: 2022 Aug 25 (Print Publication: 2022). |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101568200 Publication Model: eCollection Cited Medium: Print ISSN: 1664-462X (Print) Linking ISSN: 1664462X NLM ISO Abbreviation: Front Plant Sci Subsets: PubMed not MEDLINE |
أسماء مطبوعة: | Original Publication: Lausanne : Frontiers Research Foundation, 2010- |
مستخلص: | Anthracnose, caused by the fungus Colletotrichum lindemuthianum , is one of the devastating disease affecting common bean production and productivity worldwide. Several quantitative trait loci (QTLs) for anthracnose resistance have been identified. In order to make use of these QTLs in common bean breeding programs, a detailed meta-QTL (MQTL) analysis has been conducted. For the MQTL analysis, 92 QTLs related to anthracnose disease reported in 18 different earlier studies involving 16 mapping populations were compiled and projected on to the consensus map. This meta-analysis led to the identification of 11 MQTLs (each involving QTLs from at least two different studies) on 06 bean chromosomes and 10 QTL hotspots each involving multiple QTLs from an individual study on 07 chromosomes. The confidence interval (CI) of the identified MQTLs was found 3.51 times lower than the CI of initial QTLs. Marker-trait associations (MTAs) reported in published genome-wide association studies (GWAS) were used to validate nine of the 11 identified MQTLs, with MQTL4.1 overlapping with as many as 40 MTAs. Functional annotation of the 11 MQTL regions revealed 1,251 genes including several R genes (such as those encoding for NBS-LRR domain-containing proteins, protein kinases, etc.) and other defense related genes. The MQTLs, QTL hotspots and the potential candidate genes identified during the present study will prove useful in common bean marker-assisted breeding programs and in basic studies involving fine mapping and cloning of genomic regions associated with anthracnose resistance in common beans. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2022 Shafi, Saini, Khan, Bawa, Choudhary, Dar, Pandey, Varshney and Mir.) |
References: | Genetics. 2009 Feb;181(2):405-19. (PMID: 19087965) New Phytol. 2013 Jan;197(1):300-313. (PMID: 23126683) Theor Appl Genet. 2021 Sep;134(9):3083-3109. (PMID: 34142166) Nutrients. 2015 Feb 11;7(2):1144-73. (PMID: 25679229) Int J Mol Sci. 2017 Jun 01;18(6):. (PMID: 28587169) Sci Rep. 2022 Aug 11;12(1):13680. (PMID: 35953529) BMC Genomics. 2017 Apr 18;18(1):306. (PMID: 28420340) PLoS One. 2016 Mar 01;11(3):e0150506. (PMID: 26930078) Mol Plant Microbe Interact. 1999 Sep;12(9):774-84. (PMID: 10494630) PLoS One. 2017 Jan 11;12(1):e0169954. (PMID: 28076395) PLoS One. 2021 May 19;16(5):e0251745. (PMID: 34010322) Plant Genome. 2015 Jul;8(2):eplantgenome2014.10.0079. (PMID: 33228300) PLoS One. 2018 Feb 1;13(2):e0191700. (PMID: 29389971) Mol Plant Microbe Interact. 2000 Mar;13(3):287-96. (PMID: 10707354) Theor Appl Genet. 2022 Mar;135(3):1049-1081. (PMID: 34985537) J Am Diet Assoc. 2009 May;109(5):909-13. (PMID: 19394480) Theor Appl Genet. 2021 Feb;134(2):543-556. (PMID: 33130954) J Genet Genomics. 2007 Sep;34(9):765-76. (PMID: 17884686) Front Plant Sci. 2017 May 29;8:807. (PMID: 28611791) BMC Genomics. 2011 Jun 16;12:319. (PMID: 21679437) Front Plant Sci. 2015 Mar 17;6:141. (PMID: 25852706) Theor Appl Genet. 2014 Jul;127(7):1653-66. (PMID: 24859268) Theor Appl Genet. 2013 Sep;126(9):2245-55. (PMID: 23760652) PLoS One. 2021 Aug 19;16(8):e0256389. (PMID: 34411180) PLoS One. 2016 Aug 10;11(8):e0160749. (PMID: 27508500) Theor Appl Genet. 2011 Mar;122(5):893-903. (PMID: 21113774) Front Plant Sci. 2020 Oct 06;11:571618. (PMID: 33123180) Bioinformatics. 2012 Aug 1;28(15):2082-3. (PMID: 22661647) Front Genet. 2021 Dec 21;12:807210. (PMID: 34992638) Plant Sci. 2016 Jan;242:351-357. (PMID: 26566851) Bioinformatics. 2014 Jun 1;30(11):1623-4. (PMID: 24532720) Curr Opin Plant Biol. 2000 Aug;3(4):278-84. (PMID: 10873844) Cell Microbiol. 2009 Feb;11(2):191-8. (PMID: 19016785) Sci Rep. 2021 Nov 25;11(1):22923. (PMID: 34824302) Planta. 2022 May 5;255(6):115. (PMID: 35508739) Theor Appl Genet. 2018 Aug;131(8):1645-1658. (PMID: 29752522) G3 (Bethesda). 2015 Aug 28;5(11):2285-90. (PMID: 26318155) Front Genet. 2020 Feb 05;10:1345. (PMID: 32117410) PLoS One. 2016 Nov 9;11(11):e0165823. (PMID: 27829044) Theor Appl Genet. 2019 Nov;132(11):3079-3087. (PMID: 31367839) PLoS One. 2020 Jun 29;15(6):e0235215. (PMID: 32598372) PLoS One. 2017 Feb 15;12(2):e0171685. (PMID: 28199342) Theor Appl Genet. 2008 Feb;116(3):407-15. (PMID: 18060540) BMC Plant Biol. 2014 Apr 30;14:115. (PMID: 24779442) Front Genet. 2021 Jan 28;11:609603. (PMID: 33584807) Theor Appl Genet. 2022 Jul;135(7):2385-2405. (PMID: 35699741) BMC Genomics. 2018 Dec 7;19(1):887. (PMID: 30526476) Sci Rep. 2020 Sep 28;10(1):15925. (PMID: 32985526) PLoS One. 2016 Jun 06;11(6):e0156391. (PMID: 27270627) BMC Bioinformatics. 2007 Feb 08;8:49. (PMID: 17288608) Front Plant Sci. 2017 Aug 09;8:1398. (PMID: 28848595) Physiol Mol Biol Plants. 2021 Oct;27(10):2245-2267. (PMID: 34744364) Theor Appl Genet. 2020 Aug;133(8):2363-2375. (PMID: 32436020) Phytopathology. 2003 Jan;93(1):88-95. (PMID: 18944161) Plant Mol Biol. 2000 Oct;44(3):321-34. (PMID: 11199391) Physiol Mol Biol Plants. 2021 Dec;27(12):2767-2786. (PMID: 35035135) Physiol Mol Biol Plants. 2020 Aug;26(8):1713-1725. (PMID: 32801498) Nat Genet. 2014 Jul;46(7):707-13. (PMID: 24908249) Front Plant Sci. 2017 Nov 14;8:1843. (PMID: 29184557) Genetics. 2000 May;155(1):463-73. (PMID: 10790417) Science. 1997 Feb 7;275(5301):832-4. (PMID: 9012350) PLoS One. 2015 Oct 02;10(10):e0139450. (PMID: 26431031) PLoS One. 2020 Oct 7;15(10):e0239763. (PMID: 33027258) Sci Rep. 2021 Jun 15;11(1):12570. (PMID: 34131169) |
فهرسة مساهمة: | Keywords: GWAS; QTL; anthracnose; candidate genes; common beans; meta-QTL |
تواريخ الأحداث: | Date Created: 20220912 Latest Revision: 20220913 |
رمز التحديث: | 20240628 |
مُعرف محوري في PubMed: | PMC9453441 |
DOI: | 10.3389/fpls.2022.966339 |
PMID: | 36092444 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1664-462X |
---|---|
DOI: | 10.3389/fpls.2022.966339 |