دورية أكاديمية
أعرض في EDS

Complete Chloroplast Genome of Gladiolus gandavensis ( Gladiolus ) and Genetic Evolutionary Analysis.

التفاصيل البيبلوغرافية
العنوان: Complete Chloroplast Genome of Gladiolus gandavensis ( Gladiolus ) and Genetic Evolutionary Analysis.
المؤلفون: Qian R; Zhejiang Institute of Subtropical Crops, Wenzhou Key Laboratory of Resource Plant Innovation and Utilization, Wenzhou 325005, China., Ye Y; Zhejiang Institute of Subtropical Crops, Wenzhou Key Laboratory of Resource Plant Innovation and Utilization, Wenzhou 325005, China., Hu Q; Zhejiang Institute of Subtropical Crops, Wenzhou Key Laboratory of Resource Plant Innovation and Utilization, Wenzhou 325005, China., Ma X; Zhejiang Institute of Subtropical Crops, Wenzhou Key Laboratory of Resource Plant Innovation and Utilization, Wenzhou 325005, China., Zheng J; Zhejiang Institute of Subtropical Crops, Wenzhou Key Laboratory of Resource Plant Innovation and Utilization, Wenzhou 325005, China.
المصدر: Genes [Genes (Basel)] 2022 Sep 07; Vol. 13 (9). Date of Electronic Publication: 2022 Sep 07.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel : MDPI
مواضيع طبية MeSH: Genome, Chloroplast* , Iridaceae*/genetics, DNA, Circular ; Phylogeny ; RNA, Transfer/genetics
مستخلص: Gladiolus is an important ornamental plant that is one of the world's four most-grown cut flowers. Gladiolus gandavensis has only been found in the Cangnan County (Zhejiang Province) of China, which is recorded in the "Botanical". To explore the origin of G. gandavensis , chloroplast genome sequencing was conducted. The results indicated that a total of 151,654 bp of circular DNA was obtained. The chloroplast genome of G. gandavensis has a quadripartite structure (contains a large single-copy (LSC) region (81,547 bp), a small single-copy region (SSC) (17,895 bp), and two inverted repeats (IRs) (IRa and IRb, 52,212 bp)), similar to that of other species. In addition, a total of 84 protein-coding genes, 8 rRNA-encoding genes, and 38 tRNA-encoding genes were present in the chloroplast genome. To further study the structural characteristics of the chloroplast genome in G. gandavensis , a comparative analysis of eight species of the Iridaceae family was conducted, and the results revealed higher similarity in the IR regions than in the LSC and SSC regions. In addition, 265 simple sequence repeats (SSRs) were detected in this study. The results of the phylogenetic analysis indicated that the chloroplast genome of G. gandavensis has high homology with the Crocus cartwrightianus and Crocus sativus chloroplast genomes. Genetic analysis based on the rbcl sequence among 49 Gladiolus species showed that samples 42, 49, 50, and 54 had high homology with the three samples from China (64, 65, and 66), which might be caused by chance similarity in genotypes. These results suggest that G. gandavensis may have originated from South Africa.
References: BMC Plant Biol. 2017 Feb 10;17(1):40. (PMID: 28183294)
EMBO J. 1986 Sep;5(9):2043-2049. (PMID: 16453699)
Plant Physiol. 2002 Jun;129(2):762-73. (PMID: 12068117)
Plant Physiol. 2006 Jul;141(3):942-56. (PMID: 16698900)
Genes Genet Syst. 2003 Oct;78(5):343-52. (PMID: 14676425)
Zhong Yao Cai. 2010 Aug;33(8):1257-9. (PMID: 21213537)
Plants (Basel). 2021 Feb 02;10(2):. (PMID: 33540810)
J Biol Chem. 2002 Mar 8;277(10):8354-65. (PMID: 11719511)
Trends Cell Biol. 2000 Oct;10(10):440-7. (PMID: 10998602)
BMC Evol Biol. 2020 May 6;20(1):51. (PMID: 32375634)
Plant Physiol. 1998 Jan;116(1):439-444. (PMID: 9449851)
Genomics Proteomics Bioinformatics. 2010 Mar;8(1):77-80. (PMID: 20451164)
Gigascience. 2012 Dec 27;1(1):18. (PMID: 23587118)
Mol Biol Evol. 2013 Apr;30(4):772-80. (PMID: 23329690)
PLoS One. 2016 Jun 13;11(6):e0157123. (PMID: 27294529)
Dev Cell. 2007 Oct;13(4):467-80. (PMID: 17925224)
Mol Ecol. 1995 Dec;4(6):731-8. (PMID: 8564011)
Mol Gen Genet. 1989 Jun;217(2-3):185-94. (PMID: 2770692)
Arch Biochem Biophys. 1968 Apr;125(1):189-98. (PMID: 5655425)
J Mol Biol. 1995 Sep 1;251(5):614-28. (PMID: 7666415)
PLoS One. 2013 Oct 18;8(10):e77965. (PMID: 24205047)
Molecules. 2017 Sep 11;22(9):. (PMID: 28891993)
Science. 2001 Mar 16;291(5511):2138-41. (PMID: 11251116)
Nat Prod Res. 2003 Oct;17(5):365-8. (PMID: 14526918)
Plant Physiol. 1973 Jun;51(6):989-92. (PMID: 16658486)
Plant Physiol. 2009 Jun;150(2):1050-61. (PMID: 19403728)
Biosci Biotechnol Biochem. 1998 Feb;62(2):386-9. (PMID: 9532802)
Gigascience. 2020 Sep 1;9(9):. (PMID: 32893860)
Genome Res. 2004 Jul;14(7):1394-403. (PMID: 15231754)
Cell. 1997 Nov 14;91(4):447-56. (PMID: 9390554)
J Mol Evol. 2006 May;62(5):551-63. (PMID: 16557338)
BMC Ecol. 2013 Mar 14;13:8. (PMID: 23497206)
Plant Cell. 2008 Nov;20(11):3148-62. (PMID: 18996978)
Physiol Plant. 2002 Jul;115(3):393-400. (PMID: 12081532)
J Biol Chem. 1989 Sep 25;264(27):16100-8. (PMID: 2777778)
Biosci Biotechnol Biochem. 1996 Jan;60(1):16-24. (PMID: 8824820)
فهرسة مساهمة: Keywords: Gladiolus gandavensis; chloroplast genome sequence; comparative analysis; evolutionary genetics
المشرفين على المادة: 0 (DNA, Circular)
9014-25-9 (RNA, Transfer)
تواريخ الأحداث: Date Created: 20220923 Date Completed: 20220926 Latest Revision: 20221007
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC9498597
DOI: 10.3390/genes13091599
PMID: 36140767
قاعدة البيانات: MEDLINE
الوصف
تدمد:2073-4425
DOI:10.3390/genes13091599