دورية أكاديمية
أعرض في EDS

Integrated Jingmenvirus Polymerase Gene in Ixodes ricinus Genome.

التفاصيل البيبلوغرافية
العنوان: Integrated Jingmenvirus Polymerase Gene in Ixodes ricinus Genome.
المؤلفون: Morozkin ES; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Makenov MT; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Zhurenkova OB; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Kholodilov IS; Laboratory of Biology of Arboviruses, Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS (Institute of Poliomyelitis), 108819 Moscow, Russia., Belova OA; Laboratory of Biology of Arboviruses, Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS (Institute of Poliomyelitis), 108819 Moscow, Russia., Radyuk EV; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Fyodorova MV; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Grigoreva YE; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Litov AG; Laboratory of Biology of Arboviruses, Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS (Institute of Poliomyelitis), 108819 Moscow, Russia., Valdokhina AV; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Bulanenko VP; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Samoilov AE; Laboratory of Mathematical Biology and Bioinformatics, Research Institute for Systems Biology and Medicine, 117246 Moscow, Russia., Korneenko EV; Multiomics Research Laboratory, Research Institute for Systems Biology and Medicine, 117246 Moscow, Russia., Voizekhovskaya YA; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Neverov AD; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia., Karganova GG; Laboratory of Biology of Arboviruses, Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of RAS (Institute of Poliomyelitis), 108819 Moscow, Russia.; Department of Virology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia., Karan LS; Group of Molecular Diagnostics and Epidemiology of Zoonotic Diseases, Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia.
المصدر: Viruses [Viruses] 2022 Aug 29; Vol. 14 (9). Date of Electronic Publication: 2022 Aug 29.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915 (Electronic) Linking ISSN: 19994915 NLM ISO Abbreviation: Viruses Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI
مواضيع طبية MeSH: Ixodes*, Animals ; Deoxyribonucleases ; Genome, Insect ; Humans ; Mammals ; Phylogeny ; Polymerase Chain Reaction ; Ribonucleases
مستخلص: Members of the jingmenviruses group have been found in arthropods and mammals on all continents except Australia and Antarctica. Two viruses of this group were isolated from patients with fever after a tick bite. Using a nested RT-PCR assay targeting a jingmenvirus polymerase gene fragment, we screened ticks collected in seven regions of Russia and found that the abundant jingmenvirus-positive were of Ixodes ricinus species, with the prevalence ranging from 19.8% to 34.3%. In all cases, DNase/RNase treatment suggested that the detected molecule was DNA and subsequent next generation sequencing (NGS) proved that the viral polymerase gene was integrated in the I. ricinus genome. The copy number of the integrated polymerase gene was quantified by qPCR relative to the ITS2 gene and estimated as 1.32 copies per cell. At least three different genetic variants of the integrated polymerase gene were found in the territory of Russia. Phylogenetic analysis of the integrated jingmenvirus polymerase gene showed the highest similarity with the sequence of the correspondent gene obtained in Serbia from I. ricinus .
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فهرسة مساهمة: Keywords: Alongshan virus; Ixodes; endogenous viral elements; ixodid ticks; jingmenviruses; tick cell line
المشرفين على المادة: EC 3.1.- (Deoxyribonucleases)
EC 3.1.- (Ribonucleases)
تواريخ الأحداث: Date Created: 20220923 Date Completed: 20220926 Latest Revision: 20221005
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC9501327
DOI: 10.3390/v14091908
PMID: 36146715
قاعدة البيانات: MEDLINE
الوصف
تدمد:1999-4915
DOI:10.3390/v14091908