دورية أكاديمية

Emergence and molecular characterization of the avian infectious bronchitis virus GI-23 in commercial broiler farms from South America.

التفاصيل البيبلوغرافية
العنوان: Emergence and molecular characterization of the avian infectious bronchitis virus GI-23 in commercial broiler farms from South America.
المؤلفون: Ikuta N; Simbios Biotecnologia, Cachoeirinha, Brazil., Fonseca ASK; Simbios Biotecnologia, Cachoeirinha, Brazil., Fernando FS; Boehringer Ingelheim Animal Health do Brasil, São Paulo, Brazil., Filho TF; Boehringer Ingelheim Animal Health do Brasil, São Paulo, Brazil.; Departamento de Medicina Veterinária Preventiva, Universidade Federal de Minas Gerais - UFMG, Belo Horizonte, Brazil., Martins NRDS; Departamento de Medicina Veterinária Preventiva, Universidade Federal de Minas Gerais - UFMG, Belo Horizonte, Brazil., Lunge VR; Simbios Biotecnologia, Cachoeirinha, Brazil.; Laboratório de Diagnóstico em Medicina Veterinária, Universidade de Caxias do Sul - UCS, Caxias do Sul, Brazil.
المصدر: Transboundary and emerging diseases [Transbound Emerg Dis] 2022 Nov; Vol. 69 (6), pp. 3167-3172. Date of Electronic Publication: 2022 Oct 17.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Blackwell Verlag Country of Publication: Germany NLM ID: 101319538 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1865-1682 (Electronic) Linking ISSN: 18651674 NLM ISO Abbreviation: Transbound Emerg Dis Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Berlin : Blackwell Verlag
مواضيع طبية MeSH: Infectious bronchitis virus*/genetics , Coronavirus Infections*/epidemiology , Coronavirus Infections*/veterinary , Poultry Diseases*/epidemiology, Animals ; Phylogeny ; Farms ; Chickens ; Brazil/epidemiology ; Genotype
مستخلص: Avian infectious bronchitis virus (IBV) is the etiological agent of a highly contagious disease in the poultry industry. The spike protein (S1 subunit) is responsible for the molecular diversity of the virus and many genetic types, and lineages are described worldwide. IBV genetic type I-strain 23 (GI-23) has spread across different continents (including Asia, Europe and Africa), causing multiple outbreaks and severe economic losses throughout the poultry industry in the last decade. The present study aimed to report the emergence and molecular characterization of GI-23 in South Brazil, being detected for the first time in South America. Eighty-two broiler flocks presenting clinical suspicion of infectious bronchitis were selected for this study. Tracheal, renal and intestinal samples were collected for IBV detection and genotyping. A total of 57 flocks were positive for IBV by generic RT-qPCR targeting 5' untranslated region and 31 also tested positive for GI-11 by a specific RT-qPCR targeting S1 gene for this lineage. The remaining 26 IBV-positive samples were genotyped by partial and one by complete S1 gene/protein sequencing. Phylogenetic analysis demonstrated that all of them clustered into a specific branch of the GI-23. S1 protein sequence analysis evidenced that all Brazilian GI-23 IBVs had the two characteristic amino acid substitutions A93T and S/H118P/L, but other changes were also observed, such as S37F (n = 21; 81%), G117S (n = 17, 65%), P122S (n = 16; 61%) and W71R (n = 9; 35%). This study brings new insights into the epidemiology of the IBV GI-23 in the world, highlighting its emergence and molecular characteristics in Brazil, South America.
(© 2022 Wiley-VCH GmbH.)
References: Abozeid, H. H., & Naguib, M. M. (2020). Infectious bronchitis virus in Egypt: Genetic diversity and vaccination strategies. Veterinary Sciences, 7, 204. https://doi.org/10.3390/vetsci7040204.
Carranza, C., Astolfi-Ferreira, C. S., Santander Parra, S. H., Nuñez, L. F. N., Penzes, Z., Chacón, J. L., Sesti, L., Chacón, R. D., & Piantino Ferreira, A. J. (2017). Genetic characterization and analysis of infectious bronchitis virus isolated from Brazilian flocks between 2010 and 2015. British Poultry Science, 58, 610-623. https://doi.org/10.1080/00071668.2017.1365116.
Chacon, J. L., Rodrigues, J. N., Assayag Jr., M. S., Peloso, C., Pedroso, A. C., & Ferreira, A. J. (2011). Epidemiological survey and molecular characterization of avian infectious bronchitis virus in Brazil between 2003 and 2009. Avian Pathology, 40, 153-162. https://doi.org/10.1080/03079457.2010.544641.
Fernando, F. S., Kasmanas, T. C., Lopes, P. D., Montassier, M. F. D., Mores, M. A. Z., Casagrande Mariguela, V., Pavani, C., Moreira Dos Santos, R., Assayag Jr., M. S., & Montassier, H. J. (2017). Assessment of molecular and genetic evolution, antigenicity and virulence properties during the persistence of the infectious bronchitis virus in broiler breeders. Journal of General Virology, 98, 2470-2481. https://doi.org/10.1099/jgv.0.000893.
Fischer, S., Klosterhalfen, D., Wilms-Schulze Kump, F., & Casteel, M. Research Note: First evidence of infectious bronchitis virus Middle-East GI-23 lineage (Var2-like) in Germany (2020). Poultry Science, 99, 797-800. https://doi.org/10.1016/j.psj.2019.10.031.
Fraga, A. P., Balestrin, E., Ikuta, N., Fonseca, A. S. K., Spilki, F. R., Canal, C. W., & Lunge, V. R. (2013). Emergence of a new genotype of avian infectious bronchitis virus in Brazil. Avian Diseases, 57, 225-232. https://doi.org/10.1637/10346-090412-Reg.1.
Fraga, A. P., Ikuta, N., Fonseca, A. S. K., Spilki, F. R., Balestrin, E., Rodrigues, C. D., Canal, C. W., & Lunge, V. R. (2016). A real-time reverse-transcription polymerase chain reaction for differentiation of Massachusetts vaccine and Brazilian field genotypes of avian infectious bronchitis virus. Avian Diseases, 60, 16-21. https://doi.org/10.1637/11262-081815-RegR.1.
Fraga, A. P., Gräf, T., Pereira, C. S., Ikuta, N., Fonseca, A. S. K., & Lunge, V. R. (2018). Phylodynamic analysis and molecular diversity of the avian infectious bronchitis virus of chickens in Brazil. Infection, Genetics and Evolution, 61, 77-83. https://doi.org/10.1016/j.meegid.2018.03.014.
Houta, M. H., Hassan, K. E., El-Sawah, A. A., Elkady, M. F., Kilany, W. H., Ali, A., & Abdel-Moneim, A. S. (2021). The emergence, evolution and spread of infectious bronchitis virus genotype GI-23. Archives of Virology, 166, 9-26. https://doi.org/10.1007/s00705-020-04920-z.
Jackwood, M. W., & Wit, J. J. (2020). Infectious bronchitis. In D. E. Swayne (Ed.), Diseases of poultry (14th ed., pp. 167-188). John Wiley & Sons Inc.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., & Higgins, D. G. (2007). Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948. https://doi.org/10.1093/bioinformatics/btm404.
Lisowska, A., Pikuła, A., Opolska, J., Jasik, A., Kycko, A., & Domańska-Blicharz, K. (2021). Virulence properties of GI-23 infectious bronchitis virus isolated in Poland and efficacy of different vaccination strategies. Pathogens, 10, 522. https://doi.org/10.3390/pathogens10050522.
Lisowska, A., Sajewicz-Krukowska, J., Fusaro, A., Pikula, A., & Domanska-Blicharz, K. (2017). First characterization of a Middle-East GI-23 lineage (Var2-like) of infectious bronchitis virus in Europe. Virus Research, 242, 43-48. https://doi.org/10.1016/j.virusres.2017.09.010.
Lunge, V., Fraga, A. P., & Ikuta, N. (2016). Avian infectious bronchitis virus. Molecular detection of animal viral pathogens (pp. 307-315). CRC Press. https://doi.org/10.1201/b19719.
Marandino, A., & Pérez, R. (2021). Genetic and antigenic diversity of infectious bronchitis virus in South America. Avian Diseases, 65, 624-630. https://doi.org/10.1637/aviandiseases-D-21-00103.
Marandino, A., Tomás, G., Hernández, M., Panzera, Y., Craig, M. I., Vagnozzi, A., Vera, F., Techera, C., Grecco, S., Banda, A., Hernández, D., & Pérez, R. (2016). Development of RT-qPCR assays for the specific identification of two major genotypes of avian infectious bronchitis virus. Journal of Virological Methods, 235, 21-25. https://doi.org/10.1016/j.jviromet.2016.05.007.
Moharam, I., Sultan, H., Hassan, K., Ibrahim, M., Shany, S., Shehata, A. A., Abo-ElKhair, M., Pfaff, F., Höper, D., El Kady, M., Beer, M., Harder, T., Hafez, H., & Grund, C. (2020). Emerging infectious bronchitis virus (IBV) in Egypt: Evidence for an evolutionary advantage of a new S1 variant with a unique gene 3ab constellation. Infection, Genetics and Evolution, 85, 104433. https://doi.org/10.1016/j.meegid.2020.104433.
Nei, M., & Kumar, S. (2000). Molecular evolution and phylogenetics. Oxford University Press.
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739. https://doi.org/10.1093/molbev/msr121.
Valastro, V., Holmes, E. C., Britton, P., Fusaro, A., Jackwood, M. W., Cattoli, G., & Monne, I. (2016). S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification. Infection, Genetics and Evolution, 39, 349-364. https://doi.org/10.1016/j.meegid.2016.02.015.
معلومات مُعتمدة: SIMBIOS Biotecnologia; Boehringer Ingelheim Animal Health do Brasil
فهرسة مساهمة: Keywords: Brazil; GI-23 lineage; IBV; molecular diversity; phylogenetic
تواريخ الأحداث: Date Created: 20221005 Date Completed: 20230206 Latest Revision: 20230206
رمز التحديث: 20240628
DOI: 10.1111/tbed.14724
PMID: 36197069
قاعدة البيانات: MEDLINE
الوصف
تدمد:1865-1682
DOI:10.1111/tbed.14724