دورية أكاديمية
أعرض في EDS

The feasibility of SARS-CoV-2 surveillance using wastewater and environmental sampling in Indonesia.

التفاصيل البيبلوغرافية
العنوان: The feasibility of SARS-CoV-2 surveillance using wastewater and environmental sampling in Indonesia.
المؤلفون: Murni IK; Faculty of Medicine, Center for Child Health-Pediatric Research Office, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia.; Faculty of Medicine, Child Health Department, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Oktaria V; Faculty of Medicine, Center for Child Health-Pediatric Research Office, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia.; Faculty of Medicine, Department of Biostatistics, Epidemiology and Population Health, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Handley A; Enteric Diseases Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.; Medicines Development for Global Health, Southbank, Victoria, Australia., McCarthy DT; Department of Civil Engineering, Environmental and Public Health Microbiology Lab (EPHM Lab), Monash University, Clayton, Victoria, Australia., Donato CM; Enteric Diseases Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.; Department of Paediatrics, The University of Melbourne, Parkville, Australia., Nuryastuti T; Faculty of Medicine, Department of Microbiology, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Supriyati E; Faculty of Medicine, Center for Tropical Medicine, Public Health, and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Putri DAD; Faculty of Medicine, Center for Child Health-Pediatric Research Office, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Sari HM; Faculty of Medicine, Center for Child Health-Pediatric Research Office, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Laksono IS; Faculty of Medicine, Center for Child Health-Pediatric Research Office, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia.; Faculty of Medicine, Child Health Department, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Thobari JA; Faculty of Medicine, Center for Child Health-Pediatric Research Office, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia., Bines JE; Enteric Diseases Group, Murdoch Children's Research Institute, Parkville, Victoria, Australia.; Department of Paediatrics, The University of Melbourne, Parkville, Australia.; Department of Gastroenterology and Clinical Nutrition, Royal Children's Hospital Melbourne, Parkville, Victoria, Australia.
المصدر: PloS one [PLoS One] 2022 Oct 14; Vol. 17 (10), pp. e0274793. Date of Electronic Publication: 2022 Oct 14 (Print Publication: 2022).
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science
مواضيع طبية MeSH: COVID-19*/diagnosis , COVID-19*/epidemiology , SARS-CoV-2*/genetics, Feasibility Studies ; Humans ; Indonesia/epidemiology ; Pandemics ; RNA, Viral/analysis ; RNA, Viral/genetics ; Sewage ; Soil ; Wastewater/analysis ; Water/analysis
مستخلص: Background: Wastewater-based epidemiology (WBE) surveillance as an early warning system (EWS) for monitoring community transmission of SARS-CoV-2 in low- and middle-income country (LMIC) settings, where diagnostic testing capacity is limited, needs further exploration. We explored the feasibility to conduct a WBE surveillance in Indonesia, one of the global epicenters of the COVID-19 pandemic in the middle of 2021, with the fourth largest population in the world where sewer and non-sewered sewage systems are implemented. The feasibility and resource capacity to collect samples on a weekly or fortnightly basis with grab and/or passive sampling methods, as well as to conduct qualitative and quantitative identification of SARS-CoV-2 ribonucleic acid (RNA) using real-time RT-PCR (RT-qPCR) testing of environmental samples were explored.
Materials and Methods: We initiated a routine surveillance of wastewater and environmental sampling at three predetermined districts in Special Region of Yogyakarta Province. Water samples were collected from central and community wastewater treatment plants (WWTPs), including manholes flowing to the central WWTP, and additional soil samples were collected for the near source tracking (NST) locations (i.e., public spaces where people congregate).
Results: We began collecting samples in the Delta wave of the COVID-19 pandemic in Indonesia in July 2021. From a 10-week period, 54% (296/544) of wastewater and environmental samples were positive for SARS-CoV-2 RNA. The sample positivity rate decreased in proportion with the reported incidence of COVID-19 clinical cases in the community. The highest positivity rate of 77% in week 1, was obtained for samples collected in July 2021 and decreased to 25% in week 10 by the end of September 2021.
Conclusion: A WBE surveillance system for SARS-CoV-2 in Indonesia is feasible to monitor the community burden of infections. Future studies testing the potential of WBE and EWS for signaling early outbreaks of SARS-CoV-2 transmissions in this setting are required.
Competing Interests: The authors have declared that no competing interests exist.
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سلسلة جزيئية: figshare 10.6084/m9.figshare.19824445
المشرفين على المادة: 0 (RNA, Viral)
0 (Sewage)
0 (Soil)
0 (Waste Water)
059QF0KO0R (Water)
تواريخ الأحداث: Date Created: 20221014 Date Completed: 20221018 Latest Revision: 20221207
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC9565423
DOI: 10.1371/journal.pone.0274793
PMID: 36240187
قاعدة البيانات: MEDLINE
الوصف
تدمد:1932-6203
DOI:10.1371/journal.pone.0274793