First report and genetic characterization of Seneca Valley virus (SVV) in Chile.

التفاصيل البيبلوغرافية
العنوان:	First report and genetic characterization of Seneca Valley virus (SVV) in Chile.
المؤلفون:	Bennett B; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile., Urzúa-Encina C; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile., Pardo-Roa C; Department of Pediatric Infectious Diseases and Immunology, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile.; Advanced Interdisciplinary Rehabilitation Register (AIRR) - COVID-19 Working Group, Faculty of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile.; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Ariyama N; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile., Lecocq C; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Rivera C; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Badía C; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Suárez P; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Agredo M; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Aguayo C; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Ávila C; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Araya H; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Pérez P; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Berrios F; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile., Agüero B; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile., Mendieta V; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile., Pituco EM; Reference Laboratory of Pan American Center for Foot-and-Mouth Disease and Veterinary Public Health of the Pan American Health Organization/World Health Organization (PANAFTOSA/VPH-PAHO/WHO), Pedro Leopoldo -MG, Brazil., de Almeida IG; Reference Laboratory of Pan American Center for Foot-and-Mouth Disease and Veterinary Public Health of the Pan American Health Organization/World Health Organization (PANAFTOSA/VPH-PAHO/WHO), Pedro Leopoldo -MG, Brazil., Medina R; Department of Pediatric Infectious Diseases and Immunology, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile.; Advanced Interdisciplinary Rehabilitation Register (AIRR) - COVID-19 Working Group, Faculty of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile.; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA., Brito B; Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, Australia., Johow M; Servicio Agrícola y Ganadero (SAG), Santiago, Chile., Ramirez VN; Departamento de Medicina Preventiva Animal, Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, La Pintana, Santiago, Chile.
المصدر:	Transboundary and emerging diseases [Transbound Emerg Dis] 2022 Nov; Vol. 69 (6), pp. e3462-e3468. Date of Electronic Publication: 2022 Nov 11.
نوع المنشور:	Journal Article
اللغة:	English
بيانات الدورية:	Publisher: Blackwell Verlag Country of Publication: Germany NLM ID: 101319538 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1865-1682 (Electronic) Linking ISSN: 18651674 NLM ISO Abbreviation: Transbound Emerg Dis Subsets: MEDLINE
أسماء مطبوعة:	Original Publication: Berlin : Blackwell Verlag
مواضيع طبية MeSH:	Picornaviridae Infections/epidemiology , Picornaviridae Infections/veterinary , Picornaviridae Infections/diagnosis , Swine Diseases , Picornaviridae*/genetics, Animals ; Swine ; Chile/epidemiology ; Phylogeny ; RNA, Viral
مستخلص:	Seneca Valley virus (SVV) is a non-enveloped RNA virus and the only member of the Senecavirus A (SVA) species, in the Senecavirus genus, Picornaviridae family. SVV infection causes vesicular lesions in the oral cavity, snout and hooves of pigs. This infection is clinically indistinguishable from trade-restrictions-related diseases such as foot-and-mouth disease. Other clinical manifestations include diarrhoea, anorexia, lethargy, neurological signs and mortality in piglets during their first week of age. Before this study, Chile was considered free of vesicular diseases of swine, including SVV. In April 2022, a suspected case of vesicular disease in a swine farm was reported in Chile. The SVV was confirmed and other vesicular diseases were ruled out. An epidemiological investigation and phylogenetic analyses were performed to identify the origin and extent of the outbreak. Three hundred ninety-five samples from 44 swine farms were collected, including faeces (208), oral fluid (28), processing fluid (14), fresh semen (61), environmental samples (80) and tissue from lesions (4) for real-time RT-PCR detection. Until June 2022, the SVV has been detected in 16 out of 44 farms, all epidemiologically related to the index farm. The closest phylogenetic relationship of the Chilean SVV strain is with viruses collected from swine in California in 2017. The direct cause of the SVV introduction has not yet been identified; however, the phylogenetic analyses suggest the USA as the most likely source. Since the virus remains active in the environment, transmission by fomites such as contaminated feed cannot be discarded. Further studies are needed to determine the risk of the introduction of novel SVV and other transboundary swine pathogens to Chile. (© 2022 Wiley-VCH GmbH.)
References:	Adams, M. J., Lefkowitz, E. J., King, A. M. Q., Bamford, D. H., Breitbart, M., Davison, A. J., Ghabrial, S. A., Gorbalenya, A. E., Knowles, N. J., Krell, P., Lavigne, R., Prangishvili, D., Sanfaçon, H., Siddell, S. G., Simmonds, P., & Carstens, E. B. (2015). Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses. Arch Virol, 160, 1837-1850. https://doi.org/10.1007/s00705-015-2425-z. Arzt, J., Bertram, M. R., Vu, L. T., Pauszek, S. J., Hartwig, E. J., Smoliga, G. R., Palinski, R., Stenfeldt, C., Fish, I. H., Hoang, B. H., Phuong, N. T., Hung, V. V., Vu, P. P., Dung, N. K., Dong, P. V., Tien, N. N., & Dung, D. H. (2019). First detection and genome sequence of Senecavirus A in Vietnam. Microbiology Resource Announcements, 8, e01247-18. https://doi.org/10.1128/MRA.01247-18. Canning, P., Canon, A., Bates, J. L., Gerardy, K., Linhares, D. C. L., Piñeyro, P. E., Schwartz, K. J., Yoon, K. J., Rademacher, C. J., Holtkamp, D., & Karriker, L. (2016). Neonatal mortality, vesicular lesions and lameness associated with Senecavirus A in a U.S. sow farm. Transboundary and Emerging Diseases, 63, 373-378. https://doi.org/10.1111/tbed.12516. Caserta, L. C., Noll, J. C. G., Singrey, A., Niederwerder, M. C., Dee, S., Nelson, E. A., & Diel, D. G. (2022). Stability of Senecavirus A in animal feed ingredients and infection following consumption of contaminated feed. Transboundary and Emerging Diseases, 69, 88-96. https://doi.org/10.1111/tbed.14310. Dee, S. A., Bauermann, F. V., Niederwerder, M. C., Singrey, A., Clement, T., de Lima, M., Long, C., Patterson, G., Sheahan, M. A., Stoian, A. M. M., Petrovan, V., Jones, C. K., Jong, J. D., Ji, J., Spronk, G. D., Minion, L., Christopher-Hennings, J., Zimmerman, J. J., Rowland, R. R. R., … Nelson, E. (2018). Survival of viral pathogens in animal feed ingredients under transboundary shipping models. PLoS One, 13, e0194509. https://doi.org/10.1371/journal.pone.0194509. Goolia, M., Vannucci, F., Yang, M., Patnayak, D., Babiuk, S., & Nfon, C. K. (2017). Validation of a competitive ELISA and a virus neutralization test for the detection and confirmation of antibodies to Senecavirus A in swine sera. J VET Diagn Invest, 29, 250-253. https://doi.org/10.1177/1040638716683214. Gimenez-Lirola, L. G., Rademacher, C., Linhares, D., Harmon, K., Rotolo, M., Sun, Y., Baum, D. H., Zimmerman, J., & Piñeyro, P. (2016). Serological and molecular detection of Senecavirus A associated with an outbreak of swine idiopathic vesicular disease and neonatal mortality. Journal of Clinical Microbiology, 54, 2082-2089. https://doi.org/10.1128/JCM.00710-16. Hales, L. M., Knowles, N. J., Reddy, P. S., Xu, L., Hay, C., & Hallenbeck, P. L. Y. (2008). Complete genome sequence analysis of Seneca Valley virus-001, a novel oncolytic picornavirus. Journal of General Virology, 89, 1265-1275. https://doi.org/10.1099/vir.0.83570-0. Joshi, L. R., Fernandes, M. H. V., Clement, T., Lawson, S., Pillatzki, A., Resende, T. P., Vannucci, F. A., Kutish, G. F., Nelson, E. A., & Diel, D. G. (2016). Pathogenesis of Senecavirus A infection in finishing pigs. Journal of General Virology, 97, 3267-3279. https://doi.org/10.1099/jgv.0.000631. Leme, R. A., Alfieri, A. F., & Alfieri, A. A. (2017). Update on Senecavirus infection in pigs. Viruses, 9, 170. https://doi.org/10.3390/v9070170. Leme, R. A., Miyabe, F. M., Dall Agnol, A. M., Alfieri, A. F., & Alfieri, A. A. (2019). Seneca Valley virus RNA detection in pig feed and feed ingredients in Brazil. Transboundary and Emerging Diseases, 66, 1449-1453. https://doi.org/10.1111/tbed.13215. Leme, R. A., Oliveira, T. E. S., Alfieri, A. F., Headley, S. A., & Alfieri, A. A. (2016). Pathological, immunohistochemical and molecular findings associated with Senecavirus A-induced lesions in neonatal piglets. Journal of Comparative Pathology, 155, 145-155. https://doi.org/10.1016/j.jcpa.2016.06.011. Leme, R. A., Zotti, E., Alcântara, B. K., Oliveira, M. V., Freitas, L. A., Alfieri, A. F., & Alfieri, A. A. (2015). Senecavirus A: An emerging vesicular infection in Brazilian pig herds. Transboundary and Emerging Diseases, 62, 603-611. https://doi.org/10.1111/tbed.12430. Li, H. (2018). Minimap2: Pairwise alignment for nucleotide sequences. Bioinformatics, 34, 3094-3100. https://doi.org/10.1093/bioinformatics/bty191. Nguyen, L. - T., Schmidt, H. A., von Haeseler, A., & Minh, B. Q. (2015). IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol, 32, 268-274. https://doi.org/10.1093/molbev/msu300. Pasma, T., Davidson, S., & Shaw, S. L. (2008). Idiopathic vesicular disease in swine in Manitoba. Can Vet J, 49, 84-85. Rademacher, C., Linhares, D., Kraft, J., & Main, R. (2015). Senecavirus A Case Update. 3. Saeng-chuto, K., Rodtian, P., Temeeyasen, G., Wegner, M., & Nilubol, D. (2018). The first detection of Senecavirus A in pigs in Thailand, 2016. Transboundary and Emerging Diseases, 65, 285-288. https://doi.org/10.1111/tbed.12654. Sun, D., Vannucci, F., Knutson, T. P., Corzo, C., & Marthaler, D. G. (2017). Emergence and whole-genome sequence of Senecavirus A in Colombia. Transboundary and Emerging Diseases, 64, 1346-1349. https://doi.org/10.1111/tbed.12669. Vannucci, F. A., Linhares, D. C. L., Barcellos, D. E. S. N., Lam, H. C., Collins, J., & Marthaler, D. (2015). Identification and complete genome of Seneca Valley virus in vesicular fluid and sera of pigs affected with idiopathic vesicular disease, Brazil. Transboundary and Emerging Diseases, 62, 589-593. https://doi.org/10.1111/tbed.12410. Wu, Q., Zhao, X., Bai, Y., Sun, B., Xie, Q., & Ma, J. (2017). The first identification and complete genome of Senecavirus A affecting pig with idiopathic vesicular disease in China. Transboundary and Emerging Diseases, 64, 1633-1640. https://doi.org/10.1111/tbed.12557. Zhang, X., Zhu, Z., Yang, F., Cao, W., Tian, H., Zhang, K., Zheng, H., & Liu, X. (2018). Review of Seneca Valley Virus: A call for increased surveillance and research. Frontiers in Microbiology, 9, 940, https://doi.org/10.3389/fmicb.2018.00940. Zhang, Z., Zhang, Y., Lin, X., Chen, Z., & Wu, S. (2019). Development of a novel reverse transcription droplet digital PCR assay for the sensitive detection of Senecavirus A. Transboundary and Emerging Diseases, 66, 517-525. https://doi.org/10.1111/tbed.13056.
معلومات مُعتمدة:	Anillo_ATE220070 Animal Virology Laboratory, Faculty of Veterinary and Animal Sciences, Universidad de Chile and Programa Fondecyt; Center for Research in Influenza Pathogenesis (CRIP); 1211517 Animal Virology Laboratory, Faculty of Veterinary and Animal Sciences, Universidad de Chile and Programa Fondecyt; 3190706 Animal Virology Laboratory, Faculty of Veterinary and Animal Sciences, Universidad de Chile and Programa Fondecyt; HHSN272201400008C United States AI NIAID NIH HHS; Agricultural and Livestock Service (SAG); 001 International WHO_ World Health Organization; 21212316 Animal Virology Laboratory, Faculty of Veterinary and Animal Sciences, Universidad de Chile and Programa Fondecyt; HHSN272201400008C United States AI NIAID NIH HHS
فهرسة مساهمة:	Keywords: SVA; SVV; Seneca Valley virus; Senecavirus A; phylogeny; swine; vesicular disease
المشرفين على المادة:	0 (RNA, Viral)
SCR Organism:	Senecavirus A
تواريخ الأحداث:	Date Created: 20221103 Date Completed: 20230206 Latest Revision: 20230206
رمز التحديث:	20230206
DOI:	10.1111/tbed.14747
PMID:	36327129
قاعدة البيانات:	MEDLINE

View record at Wiley

Full Text Finder

الوصف
تدمد:	1865-1682
DOI:	10.1111/tbed.14747