دورية أكاديمية

New Wolbachia pipientis Genotype Increasing Heat Stress Resistance of Drosophila melanogaster Host Is Characterized by a Large Chromosomal Inversion.

التفاصيل البيبلوغرافية
العنوان: New Wolbachia pipientis Genotype Increasing Heat Stress Resistance of Drosophila melanogaster Host Is Characterized by a Large Chromosomal Inversion.
المؤلفون: Korenskaia AE; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.; Kurchatov Genomics Center, Institute of Cytology and Genetics, SB RAS, 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, Pirogova St. 1, 630090 Novosibirsk, Russia., Shishkina OD; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.; Department of Natural Sciences, Novosibirsk State University, Pirogova St. 1, 630090 Novosibirsk, Russia., Klimenko AI; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.; Kurchatov Genomics Center, Institute of Cytology and Genetics, SB RAS, 630090 Novosibirsk, Russia., Andreenkova OV; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Bobrovskikh MA; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Shatskaya NV; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Vasiliev GV; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia., Gruntenko NE; Institute of Cytology and Genetics SB RAS, 630090 Novosibirsk, Russia.
المصدر: International journal of molecular sciences [Int J Mol Sci] 2022 Dec 19; Vol. 23 (24). Date of Electronic Publication: 2022 Dec 19.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI, [2000-
مواضيع طبية MeSH: Drosophila melanogaster*/genetics , Drosophila melanogaster*/microbiology , Wolbachia*/genetics, Animals ; Chromosome Inversion ; Genotype ; Heat-Shock Response/genetics ; Symbiosis
مستخلص: The maternally transmitted endocellular bacteria Wolbachia is a well-known symbiont of insects, demonstrating both negative and positive effects on host fitness. The previously found Wolbachia strain wMelPlus is characterized by a positive effect on the stress-resistance of its host Drosophila melanogaster, under heat stress conditions. This investigation is dedicated to studying the genomic underpinnings of such an effect. We sequenced two closely related Wolbachia strains, wMelPlus and wMelCS112, assembled their complete genomes, and performed comparative genomic analysis engaging available Wolbachia genomes from the wMel and wMelCS groups. Despite the two strains under study sharing very close gene-composition, we discovered a large (>1/6 of total genome) chromosomal inversion in wMelPlus, spanning through the region that includes the area of the inversion earlier found in the wMel group of Wolbachia genotypes. A number of genes in unique inversion blocks of wMelPlus were identified that might be involved in the induction of a stress-resistant phenotype in the host. We hypothesize that such an inversion could rearrange established genetic regulatory-networks, causing the observed effects of such a complex fly phenotype as a modulation of heat stress resistance. Based on our findings, we propose that wMelPlus be distinguished as a separate genotype of the wMelCS group, named wMelCS3.
References: Science. 1980 Feb 29;207(4434):953-60. (PMID: 6243420)
Bioinformatics. 2012 Apr 15;28(8):1166-7. (PMID: 22368248)
Nat Biotechnol. 2022 Jul;40(7):1023-1025. (PMID: 34980915)
Evolution. 2002 Oct;56(10):1976-81. (PMID: 12449484)
Genome Biol Evol. 2013;5(11):2189-204. (PMID: 24190075)
Parasitol Today. 1995 May;11(5):168-9. (PMID: 15275347)
Curr Protoc. 2021 Dec;1(12):e323. (PMID: 34936221)
Genome Biol. 2021 Sep 14;22(1):266. (PMID: 34521459)
Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):E1647-56. (PMID: 22645353)
Proc Natl Acad Sci U S A. 2018 May 22;115(21):5492-5497. (PMID: 29735663)
PLoS Biol. 2015 Feb 10;13(2):e1002065. (PMID: 25668031)
Genome. 2022 May;65(5):287-299. (PMID: 35073184)
Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18721-6. (PMID: 25512495)
J Invertebr Pathol. 2004 Sep;87(1):45-50. (PMID: 15491598)
Nucleic Acids Res. 2005 Jun 07;33(10):3224-34. (PMID: 15942025)
Nucleic Acids Res. 2002 May 1;30(9):1902-10. (PMID: 11972326)
Nat Commun. 2018 Nov 30;9(1):5114. (PMID: 30504855)
Trends Ecol Evol. 2018 Jun;33(6):427-440. (PMID: 29731154)
PLoS Genet. 2021 Jun 18;17(6):e1009612. (PMID: 34143770)
Trends Microbiol. 2002 Sep;10(9):393-5. (PMID: 12217498)
Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544. (PMID: 29790989)
PLoS Biol. 2004 Mar;2(3):E69. (PMID: 15024419)
PLoS One. 2010 Jun 25;5(6):e11147. (PMID: 20593022)
Trends Genet. 1992 Dec;8(12):457-62. (PMID: 1337227)
PLoS One. 2013;8(1):e54373. (PMID: 23349865)
Nucleic Acids Res. 2013 Jul;41(12):e121. (PMID: 23598997)
Bioinformatics. 2018 Sep 1;34(17):i884-i890. (PMID: 30423086)
Curr Opin Microbiol. 2004 Oct;7(5):519-27. (PMID: 15451508)
Trends Ecol Evol. 2004 Sep;19(9):482-8. (PMID: 16701311)
J Bacteriol. 1998 Sep;180(18):4834-42. (PMID: 9733685)
Genet Mol Res. 2009 Jul 28;8(3):861-9. (PMID: 19731208)
J Biol Chem. 1998 Apr 3;273(14):8376-81. (PMID: 9525947)
Genome Biol. 2000;1(6):RESEARCH0011. (PMID: 11178265)
Curr Biol. 2022 Feb 28;32(4):878-888.e8. (PMID: 34919808)
Nat Biotechnol. 2019 May;37(5):540-546. (PMID: 30936562)
Int J Mol Sci. 2022 Dec 05;23(23):. (PMID: 36499640)
Nat Commun. 2018 Nov 7;9(1):4662. (PMID: 30405125)
Bioinformatics. 2018 Dec 1;34(23):4118-4120. (PMID: 29931111)
Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):769-74. (PMID: 20080750)
Biol Lett. 2021 May;17(5):20210052. (PMID: 33947218)
Microbiology (Reading). 2022 Aug;168(8):. (PMID: 35960647)
Front Immunol. 2021 Jan 29;11:626329. (PMID: 33584729)
Fly (Austin). 2012 Apr-Jun;6(2):80-92. (PMID: 22728672)
Science. 1992 Nov 20;258(5086):1362-5. (PMID: 1455232)
Genes (Basel). 2020 Jul 16;11(7):. (PMID: 32708808)
Genome Biol. 2019 Nov 14;20(1):238. (PMID: 31727128)
Microbiol Spectr. 2014 Dec;2(6):. (PMID: 26104463)
J Exp Biol. 2009 May;212(Pt 10):1436-41. (PMID: 19411536)
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. (PMID: 35073327)
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. (PMID: 33125078)
Bioinformatics. 2013 Apr 15;29(8):1072-5. (PMID: 23422339)
PLoS Genet. 2013;9(12):e1003896. (PMID: 24348259)
Curr Biol. 2005 Aug 9;15(15):1428-33. (PMID: 16085497)
Annu Rev Phytopathol. 2012;50:67-89. (PMID: 22559068)
Genetics. 2003 Aug;164(4):1279-89. (PMID: 12930739)
J Med Res. 1924 Mar;44(3):329-374.7. (PMID: 19972605)
PLoS Comput Biol. 2020 Jun 26;16(6):e1007981. (PMID: 32589667)
J Evol Biol. 2006 Nov;19(6):1964-72. (PMID: 17040394)
Proc Biol Sci. 2006 Jun 7;273(1592):1415-20. (PMID: 16777731)
Genome Biol. 2005;6(7):401; author reply 401. (PMID: 15998462)
Arch Insect Biochem Physiol. 2021 Apr;106(4):e21776. (PMID: 33644932)
Cell Host Microbe. 2021 Jun 9;29(6):879-893. (PMID: 33945798)
mBio. 2020 Oct 6;11(5):. (PMID: 33024036)
Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36. (PMID: 23391737)
PLoS Pathog. 2005 Oct;1(2):e14. (PMID: 16228015)
BMC Evol Biol. 2008 Jan 23;8:18. (PMID: 18215304)
Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10792-6. (PMID: 9380712)
Bioinformatics. 2014 Jul 15;30(14):2068-9. (PMID: 24642063)
J Mol Biol. 1990 May 20;213(2):229-37. (PMID: 2160543)
C R Acad Sci III. 2001 Mar;324(3):201-8. (PMID: 11291306)
G3 (Bethesda). 2015 Oct 23;5(12):2843-56. (PMID: 26497146)
معلومات مُعتمدة: 21-14-00090 Russian Science Foundation; FWNR-2022-0019 MINISTRY OF SCIENCE AND HIGHER EDUCATION OF THE RUSSIAN FEDERATION
فهرسة مساهمة: Keywords: Drosophila melanogaster; Wolbachia; chromosomal inversion; genome assembly; genome comparative analysis; wMelCS; wMelPlus
SCR Organism: Wolbachia pipientis
تواريخ الأحداث: Date Created: 20221223 Date Completed: 20221226 Latest Revision: 20230308
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC9786649
DOI: 10.3390/ijms232416212
PMID: 36555851
قاعدة البيانات: MEDLINE
الوصف
تدمد:1422-0067
DOI:10.3390/ijms232416212