دورية أكاديمية

Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum α-Glucosidase I with Anti-SARS-CoV-2 Activity.

التفاصيل البيبلوغرافية
العنوان: Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum α-Glucosidase I with Anti-SARS-CoV-2 Activity.
المؤلفون: Karade SS; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, United States.; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, United States., Franco EJ; Institute for Therapeutic Innovation, Department of Medicine, College of Medicine, University of Florida, Orlando, Florida 32827, United States., Rojas AC; Institute for Therapeutic Innovation, Department of Medicine, College of Medicine, University of Florida, Orlando, Florida 32827, United States., Hanrahan KC; Institute for Therapeutic Innovation, Department of Medicine, College of Medicine, University of Florida, Orlando, Florida 32827, United States., Kolesnikov A; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, United States.; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, United States., Yu W; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, United States.; Computer-Aided Drug Design Center, Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, United States.; Center for Biomolecular Therapeutics (CBT), Department of Biochemistry and Molecular Biology, School of Medicine, University of Maryland, Baltimore, Maryland 21201, United States., MacKerell AD Jr; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, United States.; Computer-Aided Drug Design Center, Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, United States.; Center for Biomolecular Therapeutics (CBT), Department of Biochemistry and Molecular Biology, School of Medicine, University of Maryland, Baltimore, Maryland 21201, United States., Hill DC; Emergent BioSolutions, Gaithersburg, Maryland 20879, United States., Weber DJ; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, United States.; Center for Biomolecular Therapeutics (CBT), Department of Biochemistry and Molecular Biology, School of Medicine, University of Maryland, Baltimore, Maryland 21201, United States., Brown AN; Institute for Therapeutic Innovation, Department of Medicine, College of Medicine, University of Florida, Orlando, Florida 32827, United States., Treston AM; Emergent BioSolutions, Gaithersburg, Maryland 20879, United States., Mariuzza RA; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland 20850, United States.; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, United States.
المصدر: Journal of medicinal chemistry [J Med Chem] 2023 Feb 23; Vol. 66 (4), pp. 2744-2760. Date of Electronic Publication: 2023 Feb 10.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 9716531 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4804 (Electronic) Linking ISSN: 00222623 NLM ISO Abbreviation: J Med Chem Subsets: MEDLINE
أسماء مطبوعة: Publication: Washington Dc : American Chemical Society
Original Publication: [Easton, Pa.] : American Chemical Society, [c1963-
مواضيع طبية MeSH: 1-Deoxynojirimycin*/chemistry , 1-Deoxynojirimycin*/pharmacology , alpha-Glucosidases*/drug effects , Antiviral Agents*/chemistry , Antiviral Agents*/pharmacology , COVID-19* , Glycoside Hydrolase Inhibitors*/chemistry , Glycoside Hydrolase Inhibitors*/pharmacology, Animals ; Endoplasmic Reticulum/enzymology ; Glycoproteins ; SARS-CoV-2/metabolism ; Quantitative Structure-Activity Relationship
مستخلص: Enveloped viruses depend on the host endoplasmic reticulum (ER) quality control (QC) machinery for proper glycoprotein folding. The endoplasmic reticulum quality control (ERQC) enzyme α-glucosidase I (α-GluI) is an attractive target for developing broad-spectrum antivirals. We synthesized 28 inhibitors designed to interact with all four subsites of the α-GluI active site. These inhibitors are derivatives of the iminosugars 1-deoxynojirimycin (1-DNJ) and valiolamine. Crystal structures of ER α-GluI bound to 25 1-DNJ and three valiolamine derivatives revealed the basis for inhibitory potency. We established the structure-activity relationship (SAR) and used the Site Identification by Ligand Competitive Saturation (SILCS) method to develop a model for predicting α-GluI inhibition. We screened the compounds against SARS-CoV-2 in vitro to identify those with greater antiviral activity than the benchmark α-glucosidase inhibitor UV-4. These host-targeting compounds are candidates for investigation in animal models of SARS-CoV-2 and for testing against other viruses that rely on ERQC for correct glycoprotein folding.
References: J Chem Theory Comput. 2008 Mar;4(3):435-47. (PMID: 26620784)
Glycobiology. 2021 May 3;31(4):378-384. (PMID: 32985653)
Antiviral Res. 2020 Dec;184:104881. (PMID: 32768411)
Sci Adv. 2020 Jun 17;6(25):eabb2210. (PMID: 32704543)
J Virol. 2005 Mar;79(6):3846-50. (PMID: 15731278)
Lancet. 2022 Apr 9;399(10333):1381-1382. (PMID: 35344736)
Semin Cell Dev Biol. 2010 Jul;21(5):491-9. (PMID: 20045480)
Chembiochem. 2009 Apr 17;10(6):1101-5. (PMID: 19294724)
ACS Omega. 2022 Jul 28;7(31):27038-27051. (PMID: 35937682)
J Chem Inf Model. 2019 Jun 24;59(6):3018-3035. (PMID: 31034213)
J Biol Chem. 2013 May 10;288(19):13563-74. (PMID: 23536181)
J Comput Chem. 2012 Dec 5;33(31):2451-68. (PMID: 22821581)
J Infect Dis. 2020 Jan 14;221(3):337-339. (PMID: 31309982)
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. (PMID: 19461840)
J Biol Chem. 2005 Aug 5;280(31):28265-71. (PMID: 15951445)
Proc Natl Acad Sci U S A. 1994 Feb 1;91(3):913-7. (PMID: 8302866)
Carbohydr Res. 1996 Dec 24;296:203-13. (PMID: 9008849)
Chem Sci. 2021 May 25;12(25):8844-8858. (PMID: 34257885)
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67. (PMID: 21460454)
J Enzyme Inhib Med Chem. 2020 Dec;35(1):1879-1890. (PMID: 33003963)
Biochemistry. 2022 May 17;61(10):822-832. (PMID: 35476408)
J Med Chem. 2021 Dec 23;64(24):18010-18024. (PMID: 34870992)
J Comput Chem. 2010 Mar;31(4):671-90. (PMID: 19575467)
Antiviral Res. 2013 Apr;98(1):35-43. (PMID: 23376501)
Biochem Soc Trans. 2017 Apr 15;45(2):571-582. (PMID: 28408497)
J Med Chem. 2020 Apr 23;63(8):4205-4214. (PMID: 32227946)
J Cell Sci. 2006 Nov 1;119(Pt 21):4373-80. (PMID: 17074831)
PLoS Comput Biol. 2009 Jul;5(7):e1000435. (PMID: 19593374)
Methods Enzymol. 1997;276:307-26. (PMID: 27754618)
N Engl J Med. 2014 Apr 24;370(17):1615-1625. (PMID: 24716661)
Science. 2014 Jan 3;343(6166):1235681. (PMID: 24385630)
Trends Pharmacol Sci. 2014 Sep;35(9):470-8. (PMID: 25108320)
J Chem Theory Comput. 2014 Jun 10;10(6):2281-2290. (PMID: 24932136)
J Chem Inf Model. 2013 Dec 23;53(12):3384-98. (PMID: 24245913)
Front Biosci (Landmark Ed). 2022 Jan 5;27(1):3. (PMID: 35090308)
Antiviral Res. 2016 May;129:93-98. (PMID: 26946111)
J Biomed Sci. 2022 Sep 6;29(1):65. (PMID: 36064696)
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. (PMID: 20383002)
Antiviral Res. 2013 Sep;99(3):251-60. (PMID: 23816430)
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. (PMID: 31588918)
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. (PMID: 20124702)
Nat Prod Rep. 2015 Jan;32(1):29-48. (PMID: 25315648)
Antivir Chem Chemother. 2002 Sep;13(5):299-304. (PMID: 12630678)
Med Res Rev. 2020 Sep;40(5):1519-1557. (PMID: 32060956)
Nucleic Acids Res. 2007;35(6):e45. (PMID: 17317681)
Viruses. 2021 Mar 05;13(3):. (PMID: 33807769)
Nat Methods. 2017 Jan;14(1):71-73. (PMID: 27819658)
J Biol Chem. 1991 Sep 5;266(25):16587-93. (PMID: 1885588)
معلومات مُعتمدة: P30 GM133894 United States GM NIGMS NIH HHS; R35 GM131710 United States GM NIGMS NIH HHS
المشرفين على المادة: 19130-96-2 (1-Deoxynojirimycin)
EC 3.2.1.20 (alpha-Glucosidases)
0 (Antiviral Agents)
EC 3.2.1.- (glucosidase I)
0 (Glycoproteins)
0 (Glycoside Hydrolase Inhibitors)
83465-22-9 (valiolamine)
تواريخ الأحداث: Date Created: 20230210 Date Completed: 20230320 Latest Revision: 20240224
رمز التحديث: 20240224
مُعرف محوري في PubMed: PMC10278443
DOI: 10.1021/acs.jmedchem.2c01750
PMID: 36762932
قاعدة البيانات: MEDLINE
الوصف
تدمد:1520-4804
DOI:10.1021/acs.jmedchem.2c01750