دورية أكاديمية
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Ultra-small bacteria and archaea exhibit genetic flexibility towards groundwater oxygen content, and adaptations for attached or planktonic lifestyles.

التفاصيل البيبلوغرافية
العنوان: Ultra-small bacteria and archaea exhibit genetic flexibility towards groundwater oxygen content, and adaptations for attached or planktonic lifestyles.
المؤلفون: Gios E; School of Biological Sciences, The University of Auckland, Auckland, New Zealand.; NINA, Norwegian Institute for Nature Research, Trondheim, Norway., Mosley OE; School of Biological Sciences, The University of Auckland, Auckland, New Zealand.; NatureMetrics Ltd, Surrey Research Park, Guildford, UK., Weaver L; Institute of Environmental Science and Research, Christchurch, New Zealand., Close M; Institute of Environmental Science and Research, Christchurch, New Zealand., Daughney C; GNS Science, Lower Hutt, New Zealand.; NIWA, National Institute of Water and Atmospheric Research, Wellington, New Zealand., Handley KM; School of Biological Sciences, The University of Auckland, Auckland, New Zealand. kim.handley@auckland.ac.nz.
المصدر: ISME communications [ISME Commun] 2023 Feb 17; Vol. 3 (1), pp. 13. Date of Electronic Publication: 2023 Feb 17.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918205372406676 Publication Model: Electronic Cited Medium: Internet ISSN: 2730-6151 (Electronic) Linking ISSN: 27306151 NLM ISO Abbreviation: ISME Commun Subsets: PubMed not MEDLINE
أسماء مطبوعة: Publication: 3 2024- : Oxford : Oxford University Press
Original Publication: [London] : Springer Nature on behalf of the International Society for Microbial Ecology, [2021]-
مستخلص: Aquifers are populated by highly diverse microbial communities, including unusually small bacteria and archaea. The recently described Patescibacteria (or Candidate Phyla Radiation) and DPANN radiation are characterized by ultra-small cell and genomes sizes, resulting in limited metabolic capacities and probable dependency on other organisms to survive. We applied a multi-omics approach to characterize the ultra-small microbial communities over a wide range of aquifer groundwater chemistries. Results expand the known global range of these unusual organisms, demonstrate the wide geographical range of over 11,000 subsurface-adapted Patescibacteria, Dependentiae and DPANN archaea, and indicate that prokaryotes with ultra-small genomes and minimalistic metabolism are a characteristic feature of the terrestrial subsurface. Community composition and metabolic activities were largely shaped by water oxygen content, while highly site-specific relative abundance profiles were driven by a combination of groundwater physicochemistries (pH, nitrate-N, dissolved organic carbon). We provide insights into the activity of ultra-small prokaryotes with evidence that they are major contributors to groundwater community transcriptional activity. Ultra-small prokaryotes exhibited genetic flexibility with respect to groundwater oxygen content, and transcriptionally distinct responses, including proportionally greater transcription invested into amino acid and lipid metabolism and signal transduction in oxic groundwater, along with differences in taxa transcriptionally active. Those associated with sediments differed from planktonic counterparts in species composition and transcriptional activity, and exhibited metabolic adaptations reflecting a surface-associated lifestyle. Finally, results showed that groups of phylogenetically diverse ultra-small organisms co-occurred strongly across sites, indicating shared preferences for groundwater conditions.
(© 2023. The Author(s).)
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معلومات مُعتمدة: UOAX1720 Ministry of Business, Innovation and Employment (MBIE); UOAX1720 Ministry of Business, Innovation and Employment (MBIE); UOAX1720 Ministry of Business, Innovation and Employment (MBIE); UOAX1720 Ministry of Business, Innovation and Employment (MBIE); UOAX1720 Ministry of Business, Innovation and Employment (MBIE); UOAX1720 Ministry of Business, Innovation and Employment (MBIE)
تواريخ الأحداث: Date Created: 20230222 Latest Revision: 20231108
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC9938205
DOI: 10.1038/s43705-023-00223-x
PMID: 36808147
قاعدة البيانات: MEDLINE
الوصف
تدمد:2730-6151
DOI:10.1038/s43705-023-00223-x