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Genome-Wide Investigation of the NAC Transcription Factor Family in Apocynum venetum Revealed Their Synergistic Roles in Abiotic Stress Response and Trehalose Metabolism.

التفاصيل البيبلوغرافية
العنوان: Genome-Wide Investigation of the NAC Transcription Factor Family in Apocynum venetum Revealed Their Synergistic Roles in Abiotic Stress Response and Trehalose Metabolism.
المؤلفون: Huang X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Qiu X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Wang Y; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Abubakar AS; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China.; Department of Agronomy, Bayero University Kano, Kano PMB 3011, Nigeria., Chen P; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Chen J; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Chen K; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Yu C; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Wang X; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China., Gao G; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China.; National Breeding Center for Bast Fiber Crops, Changsha 410221, China.; Key Laboratory of Genetic Breeding and Microbial Processing for Bast Fiber Product of Hunan Province, Changsha 410221, China., Zhu A; Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha 410221, China.; National Breeding Center for Bast Fiber Crops, Changsha 410221, China.; Key Laboratory of Genetic Breeding and Microbial Processing for Bast Fiber Product of Hunan Province, Changsha 410221, China.
المصدر: International journal of molecular sciences [Int J Mol Sci] 2023 Feb 26; Vol. 24 (5). Date of Electronic Publication: 2023 Feb 26.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI, [2000-
مواضيع طبية MeSH: Transcription Factors*/metabolism , Apocynum*, Trehalose ; Plant Proteins/genetics ; Gene Expression Regulation, Plant ; Stress, Physiological/genetics ; Phylogeny ; Multigene Family
مستخلص: NAC (NAM, ATAF1/2, and CUC2) transcription factors (TFs) are one of the most prominent plant-specific TF families and play essential roles in plant growth, development and adaptation to abiotic stress. Although the NAC gene family has been extensively characterized in many species, systematic analysis is still relatively lacking in Apocynum venetum ( A. venetum ). In this study, 74 AvNAC proteins were identified from the A. venetum genome and were classified into 16 subgroups. This classification was consistently supported by their gene structures, conserved motifs and subcellular localizations. Nucleotide substitution analysis (Ka/Ks) showed the AvNACs to be under the influence of strong purifying selection, and segmental duplication events were found to play the dominant roles in the AvNAC TF family expansion. Cis -elements analysis demonstrated that the light-, stress-, and phytohormone-responsive elements being dominant in the AvNAC promoters, and potential TFs including Dof, BBR-BPC, ERF and MIKC_MADS were visualized in the TF regulatory network. Among these AvNACs, AvNAC58 and AvNAC69 exhibited significant differential expression in response to drought and salt stresses. The protein interaction prediction further confirmed their potential roles in the trehalose metabolism pathway with respect to drought and salt resistance. This study provides a reference for further understanding the functional characteristics of NAC genes in the stress-response mechanism and development of A. venetum .
References: Nucleic Acids Res. 2021 Jan 8;49(D1):D458-D460. (PMID: 33104802)
Bioinformatics. 2015 Apr 15;31(8):1296-7. (PMID: 25504850)
Metabolites. 2019 Dec 05;9(12):. (PMID: 31817331)
Mol Plant. 2020 Aug 3;13(8):1194-1202. (PMID: 32585190)
Plant Cell Physiol. 2019 May 1;60(5):999-1010. (PMID: 30690513)
Plant Physiol Biochem. 2021 Feb;159:268-276. (PMID: 33401201)
Microb Ecol. 2008 Nov;56(4):704-19. (PMID: 18443845)
Meta Gene. 2014 Jun 01;2:407-17. (PMID: 25606426)
PeerJ. 2022 Oct 3;10:e14087. (PMID: 36213501)
Genomics Proteomics Bioinformatics. 2010 Mar;8(1):77-80. (PMID: 20451164)
Nucleic Acids Res. 2012 Apr;40(7):e49. (PMID: 22217600)
BMC Plant Biol. 2010 Jul 15;10:145. (PMID: 20630103)
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66. (PMID: 12136088)
BMC Plant Biol. 2006 Oct 12;6:25. (PMID: 17038189)
Front Plant Sci. 2022 Oct 04;13:1011616. (PMID: 36267941)
Int J Mol Sci. 2021 May 06;22(9):. (PMID: 34066424)
DNA Res. 2011 Aug;18(4):263-76. (PMID: 21685489)
Int J Mol Sci. 2022 Sep 28;23(19):. (PMID: 36232739)
Front Plant Sci. 2022 Aug 25;13:972734. (PMID: 36092439)
Sci Rep. 2021 Oct 6;11(1):19865. (PMID: 34615898)
BMC Plant Biol. 2021 Jan 6;21(1):11. (PMID: 33407148)
PLoS One. 2022 Mar 10;17(3):e0261710. (PMID: 35271574)
Gene. 2010 Oct 1;465(1-2):30-44. (PMID: 20600702)
Front Plant Sci. 2022 Sep 02;13:993841. (PMID: 36119598)
Int J Mol Sci. 2022 Mar 11;23(6):. (PMID: 35328474)
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785)
Int J Mol Sci. 2022 Aug 25;23(17):. (PMID: 36077020)
BMC Plant Biol. 2004 Jun 01;4:10. (PMID: 15171794)
PLoS One. 2015 Aug 25;10(8):e0135667. (PMID: 26305210)
Plant Biotechnol J. 2013 Jan;11(1):101-14. (PMID: 23094910)
BMC Plant Biol. 2022 Jul 15;22(1):343. (PMID: 35836131)
Plant Cell. 2004 Sep;16(9):2481-98. (PMID: 15319476)
Genome Res. 2003 Nov;13(11):2498-504. (PMID: 14597658)
BMC Plant Biol. 2020 Mar 26;20(1):128. (PMID: 32216751)
Plant Mol Biol. 2007 Sep;65(1-2):137-50. (PMID: 17619150)
Plant Physiol Biochem. 2021 Oct;167:816-830. (PMID: 34530326)
Plant Physiol. 2015 Sep;169(1):379-90. (PMID: 26149570)
Annu Rev Plant Biol. 2002;53:247-73. (PMID: 12221975)
PLoS One. 2022 Oct 20;17(10):e0271012. (PMID: 36264987)
Plants (Basel). 2022 Aug 21;11(16):. (PMID: 36015471)
BMC Plant Biol. 2019 Jun 25;19(1):278. (PMID: 31238869)
Plant J. 2004 Sep;39(6):863-76. (PMID: 15341629)
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. (PMID: 33125078)
Mol Plant. 2022 Apr 4;15(4):706-722. (PMID: 35093592)
PLoS One. 2014 Jun 09;9(6):e99368. (PMID: 24911789)
Plant Physiol Biochem. 2020 May 6;152:138-146. (PMID: 32416343)
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. (PMID: 33892491)
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W597-603. (PMID: 22661580)
New Phytol. 2022 Jul;235(1):220-233. (PMID: 35306666)
Plant Signal Behav. 2020 Sep 1;15(9):1785668. (PMID: 32662739)
Front Plant Sci. 2016 Jan 22;7:4. (PMID: 26834774)
Curr Protoc. 2022 Oct;2(10):e574. (PMID: 36200836)
Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. (PMID: 27924014)
Plant Biotechnol J. 2017 Jun;15(6):754-764. (PMID: 27892643)
Int J Phytoremediation. 2018 May 12;20(6):545-551. (PMID: 29688056)
Nucleic Acids Res. 2002 Jan 1;30(1):325-7. (PMID: 11752327)
Front Plant Sci. 2018 Mar 29;9:383. (PMID: 29651294)
Cell. 1996 Apr 19;85(2):159-70. (PMID: 8612269)
Front Plant Sci. 2021 Nov 04;12:766550. (PMID: 34804100)
J Plant Res. 2016 Sep;129(5):955-962. (PMID: 27216423)
Protoplasma. 2022 Sep;259(5):1351-1369. (PMID: 35088161)
New Phytol. 2020 Apr;226(1):5-7. (PMID: 31960459)
Crit Rev Biotechnol. 2020 Sep;40(6):750-776. (PMID: 32522044)
Plant Cell Rep. 2013 Jan;32(1):61-75. (PMID: 22983198)
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. (PMID: 19458158)
Int J Mol Sci. 2022 Apr 26;23(9):. (PMID: 35563160)
Curr Opin Biotechnol. 2016 Feb;37:36-44. (PMID: 26524248)
معلومات مُعتمدة: kq2107017 Excellent Young Innovators of Changsha; CAAS-ASTIP-IBFC04 Agricultural Science and Technology Innovation Project of the Chinese Academy of Agricul-tural Sciences
فهرسة مساهمة: Keywords: NAC transcription factor; drought stress; salt stress; trehalose metabolism pathway
المشرفين على المادة: 0 (Transcription Factors)
B8WCK70T7I (Trehalose)
0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20230311 Date Completed: 20230314 Latest Revision: 20230314
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC10003206
DOI: 10.3390/ijms24054578
PMID: 36902009
قاعدة البيانات: MEDLINE
الوصف
تدمد:1422-0067
DOI:10.3390/ijms24054578