دورية أكاديمية

Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans.

التفاصيل البيبلوغرافية
العنوان: Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans.
المؤلفون: Puppala AK; Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA., Castillo Suchkou J; Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA., French RL; Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA., Kiernan KA; Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA., Simonović M; Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA.
المصدر: Nucleic acids research [Nucleic Acids Res] 2023 May 08; Vol. 51 (8), pp. 4012-4026.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
أسماء مطبوعة: Publication: 1992- : Oxford : Oxford University Press
Original Publication: London, Information Retrieval ltd.
مواضيع طبية MeSH: Selenocysteine*/chemistry , RNA, Transfer*, Humans ; Protein Subunits ; Crystallography, X-Ray ; Catalytic Domain
مستخلص: O-Phosphoseryl-tRNASec selenium transferase (SepSecS) catalyzes the terminal step of selenocysteine (Sec) synthesis in archaea and eukaryotes. How the Sec synthetic machinery recognizes and discriminates tRNASec from the tRNA pool is essential to the integrity of the selenoproteome. Previously, we suggested that SepSecS adopts a competent conformation that is pre-ordered for catalysis. Herein, using high-resolution X-ray crystallography, we visualized tRNA-dependent conformational changes in human SepSecS that may be a prerequisite for achieving catalytic competency. We show that tRNASec binding organizes the active sites of the catalytic protomer, while stabilizing the N- and C-termini of the non-catalytic protomer. Binding of large anions to the catalytic groove may further optimize the catalytic site for substrate binding and catalysis. Our biochemical and mutational analyses demonstrate that productive SepSecS•tRNASec complex formation is enthalpically driven and primarily governed by electrostatic interactions between the acceptor-, TΨC-, and variable arms of tRNASec and helices α1 and α14 of SepSecS. The detailed visualization of the tRNA-dependent activation of SepSecS provides a structural basis for a revised model of the terminal reaction of Sec formation in archaea and eukaryotes.
(© The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research.)
References: Nucleic Acids Res. 2015 Dec 2;43(21):10534-45. (PMID: 26433229)
Science. 2009 Jul 17;325(5938):321-5. (PMID: 19608919)
Biochemistry. 2017 May 2;56(17):2261-2270. (PMID: 28414460)
Endocrinology. 2003 Jun;144(6):2505-13. (PMID: 12746313)
Genes Cells. 2000 Dec;5(12):1049-60. (PMID: 11168591)
Science. 1973 Feb 9;179(4073):588-90. (PMID: 4686466)
Biochim Biophys Acta Proteins Proteom. 2020 Aug;1868(8):140438. (PMID: 32330624)
Proc Natl Acad Sci U S A. 1991 Oct 1;88(19):8450-4. (PMID: 1924303)
Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10520-5. (PMID: 25002468)
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. (PMID: 19461840)
Nucleic Acids Res. 1998 Jan 1;26(1):148-53. (PMID: 9399820)
J Mol Biol. 1993 May 20;231(2):274-92. (PMID: 8510147)
Nat Chem Biol. 2007 Jan;3(1):29-35. (PMID: 17173027)
J Biol Chem. 1991 Apr 5;266(10):6324-8. (PMID: 2007585)
Proc Natl Acad Sci U S A. 1987 May;84(10):3156-60. (PMID: 3033637)
RNA. 1998 Sep;4(9):1029-33. (PMID: 9740122)
Proc Natl Acad Sci U S A. 2006 Dec 12;103(50):18923-7. (PMID: 17142313)
Nat Commun. 2017 Nov 15;8(1):1521. (PMID: 29142195)
J Biol Chem. 1989 Jun 15;264(17):9724-7. (PMID: 2498338)
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):479-85. (PMID: 20383001)
Amino Acids. 2018 Sep;50(9):1145-1167. (PMID: 29948343)
J Biol Chem. 1984 Jan 25;259(2):1043-50. (PMID: 6693375)
J Biol Chem. 2009 Mar 27;284(13):8233-40. (PMID: 19176520)
Biochemistry. 2013 Aug 13;52(32):5472-81. (PMID: 23865454)
Proc Natl Acad Sci U S A. 1997 May 27;94(11):5531-4. (PMID: 9159106)
Methods Enzymol. 1997;276:307-26. (PMID: 27754618)
Mol Cell. 2010 Aug 13;39(3):410-20. (PMID: 20705242)
Eur J Biochem. 1992 May 1;205(3):955-60. (PMID: 1577013)
Nucleic Acids Res. 2008 Mar;36(4):1187-99. (PMID: 18158303)
Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12848-53. (PMID: 15317934)
Proc Natl Acad Sci U S A. 1986 Jul;83(13):4650-4. (PMID: 2941757)
Nucleic Acids Res. 1993 Mar 11;21(5):1073-9. (PMID: 8464694)
Free Radic Biol Med. 2018 Nov 1;127:206-214. (PMID: 29709707)
Methods Enzymol. 2002;347:3-16. (PMID: 11898420)
Protein Sci. 2018 Jan;27(1):112-128. (PMID: 28836357)
Biochem J. 1990 Dec 1;272(2):537-40. (PMID: 2268281)
J Biol Chem. 2009 Jan 9;284(2):723-7. (PMID: 18757362)
Science. 2013 Apr 5;340(6128):75-8. (PMID: 23559248)
J Biol Chem. 2003 Apr 18;278(16):13640-6. (PMID: 12574155)
Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):646-66. (PMID: 25760612)
Proc Natl Acad Sci U S A. 2000 Mar 14;97(6):2521-6. (PMID: 10688911)
Arch Biochem Biophys. 1967 Oct;122(1):164-73. (PMID: 6076213)
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. (PMID: 20383002)
J Mol Biol. 2014 Apr 17;426(8):1723-35. (PMID: 24456689)
Sci Rep. 2016 Aug 31;6:32563. (PMID: 27576344)
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. (PMID: 31588918)
PLoS One. 2015 Oct 09;10(10):e0140353. (PMID: 26452064)
Nucleic Acids Res. 1998 Nov 15;26(22):5017-35. (PMID: 9801296)
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. (PMID: 20124702)
Nature. 1991 Jan 31;349(6308):438-40. (PMID: 1825132)
J Biol Chem. 2014 Oct 17;289(42):28783-94. (PMID: 25190812)
Biochemistry. 2006 Nov 21;45(46):13697-704. (PMID: 17105189)
Angew Chem Int Ed Engl. 2003 Oct 13;42(39):4742-58. (PMID: 14562341)
Nucleic Acids Res. 2013 Jul;41(13):6729-38. (PMID: 23649835)
PLoS One. 2011;6(5):e20032. (PMID: 21629646)
Exp Clin Endocrinol. 1993;101(2):87-93. (PMID: 8405144)
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):470-8. (PMID: 20383000)
RNA. 2017 Nov;23(11):1685-1699. (PMID: 28808125)
J Biol Chem. 2008 Feb 29;283(9):5849-65. (PMID: 18093968)
معلومات مُعتمدة: R01 GM097042 United States GM NIGMS NIH HHS
المشرفين على المادة: 0CH9049VIS (Selenocysteine)
0 (Protein Subunits)
9014-25-9 (RNA, Transfer)
تواريخ الأحداث: Date Created: 20230317 Date Completed: 20230509 Latest Revision: 20230510
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC10164584
DOI: 10.1093/nar/gkad182
PMID: 36929010
قاعدة البيانات: MEDLINE
الوصف
تدمد:1362-4962
DOI:10.1093/nar/gkad182