دورية أكاديمية
Characterization of six new complete mitochondrial genomes of Chiasmodontidae (Scombriformes, Percomorpha) and considerations about the phylogenetic relationships of the family.
| العنوان: | Characterization of six new complete mitochondrial genomes of Chiasmodontidae (Scombriformes, Percomorpha) and considerations about the phylogenetic relationships of the family. |
|---|---|
| المؤلفون: | Rodrigues-Oliveira IH; Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, Brazil.; Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil.; Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil., Pasa R; Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil.; Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil., Menegidio FB; Technological Research Center, University of Mogi das Cruzes, Mogi das Cruzes 08780-911, Brazil.; Integrated Biotechnology Center, University of Mogi das Cruzes, Mogi das Cruzes 08780-911, Brazil., Kavalco KF; Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil.; Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, Rio Paranaíba 38810-000, Brazil. |
| المصدر: | Genomics & informatics [Genomics Inform] 2023 Mar; Vol. 21 (1), pp. e10. Date of Electronic Publication: 2023 Mar 31. |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Korea Genome Organization Country of Publication: Korea (South) NLM ID: 101223836 Publication Model: Print-Electronic Cited Medium: Print ISSN: 1598-866X (Print) Linking ISSN: 1598866X NLM ISO Abbreviation: Genomics Inform Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: Seoul : Korea Genome Organization |
| مستخلص: | The fishes of the Chiasmodontidae family, known as swallower fishes, are species adapted to live in deep seas. Several studies have shown the proximity of this family to Tetragonuridae and Amarsipidae. However, the phylogenetic position of this clade related to other Pelagiaria groups remains uncertain even when phylogenomic studies are employed. Since the low number of published mitogenomes, our study aimed to assemble six new mitochondrial genomes of Chiasmodontidae from database libraries to expand the discussion regarding the phylogeny of this group within Scombriformes. As expected, the composition and organization of mitogenomes were stable among the analyzed species, although we detected repetitive sequences in the D-loop of species of the genus Kali not seen in Chiasmodon, Dysalotus, and Pseudoscopelus. Our phylogeny incorporating 51 mitogenomes from several families of Scombriformes, including nine chiasmodontids, recovered interfamilial relationships well established in previous studies, including a clade containing Chiasmodontidae, Amarsipidae, and Tetragonuridae. However, phylogenetic relationships between larger clades remain unclear, with disagreements between different phylogenomic studies. We argue that such inconsistencies are not only due to biases and limitations in the data but mainly to complex biological events in the adaptive irradiation of Scombriformes after the Cretaceous-Paleogene extinction event. |
| References: | Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. (PMID: 29722887) Mol Biol Evol. 2013 Nov;30(11):2531-40. (PMID: 23955518) PLoS One. 2013 Sep 04;8(9):e73535. (PMID: 24023883) Cladistics. 2011 Apr;27(2):171-180. (PMID: 34875773) Mol Phylogenet Evol. 2018 Jul;124:172-180. (PMID: 29526805) BMC Evol Biol. 2016 Apr 14;16:80. (PMID: 27075887) Nat Methods. 2012 May 30;9(6):523-4. (PMID: 22669646) Mol Biol Evol. 2001 Nov;18(11):1993-2009. (PMID: 11606696) Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147) BMC Evol Biol. 2017 Jul 6;17(1):162. (PMID: 28683774) PLoS One. 2015 Sep 17;10(9):e0138446. (PMID: 26379155) Mol Biol Evol. 2006 Feb;23(2):254-67. (PMID: 16221896) Nucleic Acids Res. 2020 Jul 2;48(W1):W395-W402. (PMID: 32479607) Nucleic Acids Res. 1999 Jan 15;27(2):573-80. (PMID: 9862982) Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12738-43. (PMID: 23858462) Nucleic Acids Res. 2017 Feb 28;45(4):e18. (PMID: 28204566) Life (Basel). 2021 Feb 25;11(3):. (PMID: 33669100) Mol Phylogenet Evol. 2004 May;31(2):658-79. (PMID: 15062801) BMC Genomics. 2011 Aug 08;12:402. (PMID: 21824423) Mol Biol Evol. 2010 Dec;27(12):2804-16. (PMID: 20591845) Mol Biol Evol. 2020 May 1;37(5):1530-1534. (PMID: 32011700) Syst Biol. 2021 Oct 13;70(6):1123-1144. (PMID: 33783539) Proc Biol Sci. 2019 Sep 11;286(1910):20191502. (PMID: 31506051) Mol Phylogenet Evol. 2019 Jan;130:132-142. (PMID: 30321694) Nat Methods. 2017 Jun;14(6):587-589. (PMID: 28481363) Syst Biol. 2005 Jun;54(3):373-90. (PMID: 16012105) |
| فهرسة مساهمة: | Keywords: Cretaceous-Paleogene extinction event; Pelagiaria; mitogenome; phylogeny; swallowers fishes |
| تواريخ الأحداث: | Date Created: 20230410 Latest Revision: 20230413 |
| رمز التحديث: | 20230413 |
| مُعرف محوري في PubMed: | PMC10085734 |
| DOI: | 10.5808/gi.22041 |
| PMID: | 37037468 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1598-866X |
|---|---|
| DOI: | 10.5808/gi.22041 |