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Evolutionary constraint and innovation across hundreds of placental mammals.

التفاصيل البيبلوغرافية
العنوان: Evolutionary constraint and innovation across hundreds of placental mammals.
المؤلفون: Christmas MJ; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Kaplow IM; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Genereux DP; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA., Dong MX; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Hughes GM; School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland., Li X; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Morningside Graduate School of Biomedical Sciences, UMass Chan Medical School, Worcester, MA 01605, USA.; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA., Sullivan PF; Department of Genetics, University of North Carolina Medical School, Chapel Hill, NC 27599, USA.; Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden., Hindle AG; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV 89154, USA., Andrews G; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA., Armstrong JC; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Bianchi M; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Breit AM; School of Biology and Ecology, University of Maine, Orono, ME 04469, USA., Diekhans M; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Fanter C; School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV 89154, USA., Foley NM; Veterinary Integrative Biosciences, Texas A&M University, College Station, TX 77843, USA., Goodman DB; Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA 94143, USA., Goodman L; Fauna Bio, Inc., Emeryville, CA 94608, USA., Keough KC; Fauna Bio, Inc., Emeryville, CA 94608, USA.; Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA.; Gladstone Institutes, San Francisco, CA 94158, USA., Kirilenko B; Faculty of Biosciences, Goethe-University, 60438 Frankfurt, Germany.; LOEWE Centre for Translational Biodiversity Genomics, 60325 Frankfurt, Germany.; Senckenberg Research Institute, 60325 Frankfurt, Germany., Kowalczyk A; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lawless C; School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland., Lind AL; Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA.; Gladstone Institutes, San Francisco, CA 94158, USA., Meadows JRS; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Moreira LR; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA., Redlich RW; Department of Biological Sciences, Mellon College of Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Ryan L; School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland., Swofford R; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA., Valenzuela A; Department of Experimental and Health Sciences, Institute of Evolutionary Biology (UPF-CSIC), Universitat Pompeu Fabra, 08003 Barcelona, Spain., Wagner F; Museum of Zoology, Senckenberg Natural History Collections Dresden, 01109 Dresden, Germany., Wallerman O; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Brown AR; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Damas J; The Genome Center, University of California Davis, Davis, CA 95616, USA., Fan K; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA., Gatesy J; Division of Vertebrate Zoology, American Museum of Natural History, New York, NY 10024, USA., Grimshaw J; Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA., Johnson J; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA., Kozyrev SV; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Lawler AJ; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Department of Biological Sciences, Mellon College of Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Marinescu VD; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden., Morrill KM; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Morningside Graduate School of Biomedical Sciences, UMass Chan Medical School, Worcester, MA 01605, USA.; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA., Osmanski A; Medical Scientist Training Program, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA., Paulat NS; Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA., Phan BN; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Medical Scientist Training Program, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA., Reilly SK; Department of Genetics, Yale School of Medicine, New Haven, CT 06510, USA., Schäffer DE; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Steiner C; Conservation Genetics, San Diego Zoo Wildlife Alliance, Escondido, CA 92027, USA., Supple MA; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Wilder AP; Conservation Genetics, San Diego Zoo Wildlife Alliance, Escondido, CA 92027, USA., Wirthlin ME; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Allen Institute for Brain Science, Seattle, WA 98109, USA., Xue JR; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA., Birren BW; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA., Gazal S; Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA., Hubley RM; Institute for Systems Biology, Seattle, WA 98109, USA., Koepfli KP; Center for Species Survival, Smithsonian's National Zoo and Conservation Biology Institute, Washington, DC 20008, USA.; Computer Technologies Laboratory, ITMO University, St. Petersburg 197101, Russia.; Smithsonian-Mason School of Conservation, George Mason University, Front Royal, VA 22630, USA., Marques-Bonet T; Catalan Institution of Research and Advanced Studies (ICREA), 08010 Barcelona, Spain.; CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), 08036 Barcelona, Spain.; Department of Medicine and Life Sciences, Institute of Evolutionary Biology (UPF-CSIC), Universitat Pompeu Fabra, 08003 Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Barcelona, Spain., Meyer WK; Department of Biological Sciences, Lehigh University, Bethlehem, PA 18015, USA., Nweeia M; Department of Comprehensive Care, School of Dental Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.; Department of Vertebrate Zoology, Canadian Museum of Nature, Ottawa, Ontario K2P 2R1, Canada.; Department of Vertebrate Zoology, Smithsonian Institution, Washington, DC 20002, USA.; Narwhal Genome Initiative, Department of Restorative Dentistry and Biomaterials Sciences, Harvard School of Dental Medicine, Boston, MA 02115, USA., Sabeti PC; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.; Howard Hughes Medical Institute, Harvard University, Cambridge, MA 02138, USA., Shapiro B; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA.; Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Smit AFA; Institute for Systems Biology, Seattle, WA 98109, USA., Springer MS; Department of Evolution, Ecology and Organismal Biology, University of California Riverside, Riverside, CA 92521, USA., Teeling EC; School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland., Weng Z; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA., Hiller M; Faculty of Biosciences, Goethe-University, 60438 Frankfurt, Germany.; LOEWE Centre for Translational Biodiversity Genomics, 60325 Frankfurt, Germany.; Senckenberg Research Institute, 60325 Frankfurt, Germany., Levesque DL; School of Biology and Ecology, University of Maine, Orono, ME 04469, USA., Lewin HA; The Genome Center, University of California Davis, Davis, CA 95616, USA.; Department of Evolution and Ecology, University of California Davis, Davis, CA 95616, USA.; John Muir Institute for the Environment, University of California Davis, Davis, CA 95616, USA., Murphy WJ; Veterinary Integrative Biosciences, Texas A&M University, College Station, TX 77843, USA., Navarro A; Catalan Institution of Research and Advanced Studies (ICREA), 08010 Barcelona, Spain.; Department of Medicine and Life Sciences, Institute of Evolutionary Biology (UPF-CSIC), Universitat Pompeu Fabra, 08003 Barcelona, Spain.; BarcelonaBeta Brain Research Center, Pasqual Maragall Foundation, 08005 Barcelona, Spain.; CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), 08003 Barcelona, Spain., Paten B; Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Pollard KS; Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA.; Gladstone Institutes, San Francisco, CA 94158, USA.; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA., Ray DA; Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA., Ruf I; Division of Messel Research and Mammalogy, Senckenberg Research Institute and Natural History Museum Frankfurt, 60325 Frankfurt am Main, Germany., Ryder OA; Conservation Genetics, San Diego Zoo Wildlife Alliance, Escondido, CA 92027, USA.; Department of Evolution, Behavior and Ecology, School of Biological Sciences, University of California San Diego, La Jolla, CA 92039, USA., Pfenning AR; Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lindblad-Toh K; Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, 751 32 Uppsala, Sweden.; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA., Karlsson EK; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.; Program in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA.; Program in Molecular Medicine, UMass Chan Medical School, Worcester, MA 01605, USA.
مؤلفون مشاركون: Zoonomia Consortium§
المصدر: Science (New York, N.Y.) [Science] 2023 Apr 28; Vol. 380 (6643), pp. eabn3943. Date of Electronic Publication: 2023 Apr 28.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE
أسماء مطبوعة: Publication: : Washington, DC : American Association for the Advancement of Science
Original Publication: New York, N.Y. : [s.n.] 1880-
مواضيع طبية MeSH: Eutheria*/genetics , Evolution, Molecular*, Animals ; Female ; Humans ; Conserved Sequence/genetics ; Genome, Human
مستخلص: Zoonomia is the largest comparative genomics resource for mammals produced to date. By aligning genomes for 240 species, we identify bases that, when mutated, are likely to affect fitness and alter disease risk. At least 332 million bases (~10.7%) in the human genome are unusually conserved across species (evolutionarily constrained) relative to neutrally evolving repeats, and 4552 ultraconserved elements are nearly perfectly conserved. Of 101 million significantly constrained single bases, 80% are outside protein-coding exons and half have no functional annotations in the Encyclopedia of DNA Elements (ENCODE) resource. Changes in genes and regulatory elements are associated with exceptional mammalian traits, such as hibernation, that could inform therapeutic development. Earth's vast and imperiled biodiversity offers distinctive power for identifying genetic variants that affect genome function and organismal phenotypes.
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معلومات مُعتمدة: U01 HG010961 United States HG NHGRI NIH HHS; U41 HG002371 United States HG NHGRI NIH HHS; R24 OD018250 United States OD NIH HHS; R01 HG008742 United States HG NHGRI NIH HHS; U41 HG007234 United States HG NHGRI NIH HHS; DP1 DA046585 United States DA NIDA NIH HHS; R01 HG002939 United States HG NHGRI NIH HHS; U24 HG010136 United States HG NHGRI NIH HHS; U19 AG057377 United States AG NIA NIH HHS; U24 HG009446 United States HG NHGRI NIH HHS; R01 HG010485 United States HG NHGRI NIH HHS; F30 DA053020 United States DA NIDA NIH HHS; R01 CA255319 United States CA NCI NIH HHS; R37 CA218570 United States CA NCI NIH HHS
فهرسة مساهمة: Investigator: G Andrews; JC Armstrong; M Bianchi; BW Birren; KR Bredemeyer; AM Breit; MJ Christmas; H Clawson; J Damas; F Di Palma; M Diekhans; MX Dong; E Eizirik; K Fan; C Fanter; NM Foley; K Forsberg-Nilsson; CJ Garcia; J Gatesy; S Gazal; DP Genereux; L Goodman; J Grimshaw; MK Halsey; AJ Harris; G Hickey; M Hiller; AG Hindle; RM Hubley; GM Hughes; J Johnson; D Juan; IM Kaplow; EK Karlsson; KC Keough; B Kirilenko; KP Koepfli; JM Korstian; A Kowalczyk; SV Kozyrev; AJ Lawler; C Lawless; T Lehmann; DL Levesque; HA Lewin; X Li; A Lind; K Lindblad-Toh; A Mackay-Smith; VD Marinescu; T Marques-Bonet; VC Mason; JRS Meadows; WK Meyer; JE Moore; LR Moreira; DD Moreno-Santillan; KM Morrill; G Muntané; WJ Murphy; A Navarro; M Nweeia; S Ortmann; A Osmanski; B Paten; NS Paulat; AR Pfenning; BN Phan; KS Pollard; HE Pratt; DA Ray; SK Reilly; JR Rosen; I Ruf; L Ryan; OA Ryder; PC Sabeti; DE Schäffer; A Serres; B Shapiro; AFA Smit; M Springer; C Srinivasan; C Steiner; JM Storer; KAM Sullivan; PF Sullivan; E Sundström; MA Supple; R Swofford; JE Talbot; E Teeling; J Turner-Maier; A Valenzuela; F Wagner; O Wallerman; C Wang; J Wang; Z Weng; AP Wilder; ME Wirthlin; JR Xue; X Zhang
تواريخ الأحداث: Date Created: 20230427 Date Completed: 20230515 Latest Revision: 20240607
رمز التحديث: 20240607
مُعرف محوري في PubMed: PMC10250106
DOI: 10.1126/science.abn3943
PMID: 37104599
قاعدة البيانات: MEDLINE
الوصف
تدمد:1095-9203
DOI:10.1126/science.abn3943