دورية أكاديمية

An African-Specific Variant of TP53 Reveals PADI4 as a Regulator of p53-Mediated Tumor Suppression.

التفاصيل البيبلوغرافية
العنوان: An African-Specific Variant of TP53 Reveals PADI4 as a Regulator of p53-Mediated Tumor Suppression.
المؤلفون: Indeglia A; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.; Graduate Group in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania., Leung JC; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Miller SA; Program in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, Pennsylvania., Leu JI; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania., Dougherty JF; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Clarke NL; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Kirven NA; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Shao C; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Ke L; Program in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, Pennsylvania., Lovell S; Del Shankel Structural Biology Center, The University of Kansas, Lawrence, Kansas., Barnoud T; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Lu DY; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Lin C; Program in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania., Kannan T; Program in Gene Expression and Regulation, The Wistar Institute, Philadelphia, Pennsylvania., Battaile KP; NYX, New York Structural Biology Center, Upton, New York., Yang THL; Program in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania., Batista Oliva I; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Claiborne DT; Program in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania., Vogel P; Department of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee., Liu L; Del Shankel Structural Biology Center, The University of Kansas, Lawrence, Kansas., Liu Q; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Nefedova Y; Program in Immunology, Microenvironment and Metastasis, The Wistar Institute, Philadelphia, Pennsylvania., Cassel J; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Auslander N; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania., Kossenkov AV; Program in Gene Expression and Regulation, The Wistar Institute, Philadelphia, Pennsylvania., Karanicolas J; Program in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, Pennsylvania., Murphy ME; Program in Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, Pennsylvania.
المصدر: Cancer discovery [Cancer Discov] 2023 Jul 07; Vol. 13 (7), pp. 1696-1719.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 101561693 Publication Model: Print Cited Medium: Internet ISSN: 2159-8290 (Electronic) Linking ISSN: 21598274 NLM ISO Abbreviation: Cancer Discov Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Philadelphia, PA : American Association for Cancer Research
مواضيع طبية MeSH: Genes, p53* , Neoplasms*/genetics , Tumor Suppressor Protein p53*/metabolism, Animals ; Humans ; Mice ; African People/genetics
مستخلص: TP53 is the most frequently mutated gene in cancer, yet key target genes for p53-mediated tumor suppression remain unidentified. Here, we characterize a rare, African-specific germline variant of TP53 in the DNA-binding domain Tyr107His (Y107H). Nuclear magnetic resonance and crystal structures reveal that Y107H is structurally similar to wild-type p53. Consistent with this, we find that Y107H can suppress tumor colony formation and is impaired for the transactivation of only a small subset of p53 target genes; this includes the epigenetic modifier PADI4, which deiminates arginine to the nonnatural amino acid citrulline. Surprisingly, we show that Y107H mice develop spontaneous cancers and metastases and that Y107H shows impaired tumor suppression in two other models. We show that PADI4 is itself tumor suppressive and that it requires an intact immune system for tumor suppression. We identify a p53-PADI4 gene signature that is predictive of survival and the efficacy of immune-checkpoint inhibitors.
Significance: We analyze the African-centric Y107H hypomorphic variant and show that it confers increased cancer risk; we use Y107H in order to identify PADI4 as a key tumor-suppressive p53 target gene that contributes to an immune modulation signature and that is predictive of cancer survival and the success of immunotherapy. See related commentary by Bhatta and Cooks, p. 1518. This article is highlighted in the In This Issue feature, p. 1501.
(2023 The Authors; Published by the American Association for Cancer Research.)
التعليقات: Comment in: Cancer Discov. 2023 Jul 7;13(7):1518-1520. (PMID: 37416992)
References: Apoptosis. 2006 Feb;11(2):183-96. (PMID: 16502257)
Cell. 1997 Mar 7;88(5):593-602. (PMID: 9054499)
Nat Cell Biol. 2013 Jan;15(1):2-8. (PMID: 23263379)
BMC Bioinformatics. 2011 Aug 04;12:323. (PMID: 21816040)
Mol Cell. 2020 Feb 6;77(3):633-644.e5. (PMID: 31836388)
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. (PMID: 19461840)
Cancer Res. 2018 Oct 1;78(19):5694-5705. (PMID: 30115697)
Mol Cancer Ther. 2020 Jul;19(7):1530-1538. (PMID: 32371579)
Cell Rep. 2013 May 30;3(5):1339-45. (PMID: 23665218)
NPJ Breast Cancer. 2017 Feb 27;3:5. (PMID: 28649645)
Oncogene. 2022 Feb;41(7):1011-1023. (PMID: 34907344)
J Biol Chem. 2022 Dec;298(12):102637. (PMID: 36309086)
Cancer Res Commun. 2021 Oct;1(1):17-29. (PMID: 35187538)
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42. (PMID: 21460441)
Cancer Cell. 2023 Mar 13;41(3):505-526. (PMID: 36827980)
Pathobiology. 2022;89(1):38-48. (PMID: 34569542)
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2288-94. (PMID: 15572783)
Cancer Res. 2020 Jun 1;80(11):2125-2137. (PMID: 32265227)
Cell Death Differ. 2022 May;29(5):961-971. (PMID: 35396345)
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):282-92. (PMID: 21460446)
Genes Dev. 2003 Sep 15;17(18):2233-8. (PMID: 12952892)
Genes Dev. 2016 Apr 15;30(8):918-30. (PMID: 27034505)
Cell Death Differ. 2022 May;29(5):983-987. (PMID: 35361963)
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21. (PMID: 20057044)
Cancer Cell Int. 2010 Mar 12;10:7. (PMID: 20222985)
J Biol Chem. 2008 Jul 18;283(29):20060-8. (PMID: 18499678)
Nat Med. 2019 Dec;25(12):1916-1927. (PMID: 31792460)
Genome Biol. 2014;15(12):550. (PMID: 25516281)
Cell Rep. 2019 Mar 12;26(11):3051-3060.e4. (PMID: 30865893)
Nature. 2014 Mar 6;507(7490):104-8. (PMID: 24463520)
Mol Cell. 2020 Nov 5;80(3):452-469.e9. (PMID: 33157015)
Oncogene. 2010 May 27;29(21):3153-62. (PMID: 20190809)
Nat Methods. 2015 May;12(5):453-7. (PMID: 25822800)
Oncogene. 2008 Apr 24;27(19):2788-94. (PMID: 17998932)
Nat Genet. 2003 Aug;34(4):395-402. (PMID: 12833157)
Cell. 2016 Mar 24;165(1):35-44. (PMID: 26997480)
Mol Cell Biol. 2011 Mar;31(6):1201-13. (PMID: 21245379)
Development. 2002 Jun;129(12):2997-3008. (PMID: 12050146)
Int J Biol Sci. 2017 Feb 25;13(3):358-366. (PMID: 28367100)
Sci Adv. 2021 Aug 27;7(35):. (PMID: 34452909)
Nat Biotechnol. 2020 Jun;38(6):675-678. (PMID: 32444850)
Cell. 2009 May 1;137(3):413-31. (PMID: 19410540)
Cancer Res. 2009 Nov 15;69(22):8761-9. (PMID: 19843866)
Oncotarget. 2016 Sep 20;7(38):62159-62176. (PMID: 27556695)
J Natl Cancer Inst. 2015 Apr 20;107(7):. (PMID: 25896519)
Curr Protoc. 2021 Mar;1(3):e90. (PMID: 33780170)
PLoS One. 2017 Sep 26;12(9):e0185092. (PMID: 28950000)
Mol Cell Biol. 2008 Aug;28(15):4745-58. (PMID: 18505818)
Cancer Manag Res. 2019 Jan 10;11:625-636. (PMID: 30666159)
Oncogene. 1996 Dec 19;13(12):2575-87. (PMID: 9000131)
Cold Spring Harb Perspect Biol. 2010 Feb;2(2):a001107. (PMID: 20182618)
Cancer Res. 2020 Sep 1;80(17):3732-3744. (PMID: 32675277)
Cancers (Basel). 2020 Nov 18;12(11):. (PMID: 33218159)
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. (PMID: 20383002)
Cell Cycle. 2016 Oct;15(19):2557-2560. (PMID: 27484708)
J Mol Biochem. 2012;1(2):76-85. (PMID: 27882309)
Oncotarget. 2019 Feb 5;10(11):1217-1223. (PMID: 30838093)
Nat Methods. 2012 Mar 04;9(4):357-9. (PMID: 22388286)
Front Immunol. 2012 Nov 29;3:360. (PMID: 23264775)
Cell Death Differ. 2021 May;28(5):1477-1492. (PMID: 33257846)
Oncogene. 2017 Jul 13;36(28):3943-3956. (PMID: 28288132)
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. (PMID: 20124702)
J Mol Biol. 2005 May 6;348(3):589-96. (PMID: 15826656)
Cold Spring Harb Perspect Biol. 2010 Jan;2(1):a001008. (PMID: 20182602)
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32. (PMID: 20124692)
Science. 2019 Nov 22;366(6468):1013-1021. (PMID: 31699883)
Cell Metab. 2018 Nov 6;28(5):721-736.e6. (PMID: 30122553)
Cell. 1993 Nov 19;75(4):817-25. (PMID: 8242752)
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):293-302. (PMID: 21460447)
Tumour Biol. 2016 Apr;37(4):5375-83. (PMID: 26563365)
Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11851-6. (PMID: 23818587)
Mol Cell. 2001 Mar;7(3):683-94. (PMID: 11463392)
Bioessays. 2014 Aug;36(8):736-40. (PMID: 24889365)
Science. 2003 Nov 7;302(5647):1036-8. (PMID: 14500851)
Nat Commun. 2012 Feb 14;3:676. (PMID: 22334079)
Proc Natl Acad Sci U S A. 2023 Feb 14;120(7):e2212940120. (PMID: 36749725)
Nature. 1995 Oct 12;377(6549):552-7. (PMID: 7566157)
Nature. 2013 Oct 17;502(7471):333-339. (PMID: 24132290)
Cold Spring Harb Perspect Med. 2017 Feb 1;7(2):. (PMID: 27836911)
J Mol Cell Biol. 2020 Sep 1;12(9):674-687. (PMID: 32722796)
BMC Cancer. 2009 Jan 30;9:40. (PMID: 19183436)
J Biol Chem. 2011 May 13;286(19):17069-78. (PMID: 21454715)
Sci Signal. 2013 Apr 02;6(269):pl1. (PMID: 23550210)
Science. 2004 Oct 8;306(5694):279-83. (PMID: 15345777)
Cancer Cell. 2014 Mar 17;25(3):304-17. (PMID: 24651012)
Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8424-9. (PMID: 12826609)
معلومات مُعتمدة: R00 CA241367 United States CA NCI NIH HHS; T32 GM008216 United States GM NIGMS NIH HHS; R50 CA211199 United States CA NCI NIH HHS; R01 CA102184 United States CA NCI NIH HHS; T32 CA009171 United States CA NCI NIH HHS; R01 CA238611 United States CA NCI NIH HHS; K99 CA252025 United States CA NCI NIH HHS; S10 OD030394 United States OD NIH HHS; P30 CA006927 United States CA NCI NIH HHS; R00 CA252025 United States CA NCI NIH HHS; T32 CA009035 United States CA NCI NIH HHS; P30 DK050306 United States DK NIDDK NIH HHS; P30 CA010815 United States CA NCI NIH HHS
المشرفين على المادة: EC 3.5.3.15 (PADI4 protein, human)
EC 3.5.3.15 (Padi4 protein, mouse)
0 (TP53 protein, human)
0 (Tumor Suppressor Protein p53)
تواريخ الأحداث: Date Created: 20230504 Date Completed: 20230720 Latest Revision: 20240207
رمز التحديث: 20240207
مُعرف محوري في PubMed: PMC10326602
DOI: 10.1158/2159-8290.CD-22-1315
PMID: 37140445
قاعدة البيانات: MEDLINE
الوصف
تدمد:2159-8290
DOI:10.1158/2159-8290.CD-22-1315