دورية أكاديمية
أعرض في EDS

Functional annotation of rhizospheric phageome of the wild plant species Moringa oleifera .

التفاصيل البيبلوغرافية
العنوان: Functional annotation of rhizospheric phageome of the wild plant species Moringa oleifera .
المؤلفون: Ashy RA; Department of Biology, College of Science, University of Jeddah, Jeddah, Saudi Arabia., Jalal RS; Department of Biology, College of Science, University of Jeddah, Jeddah, Saudi Arabia., Sonbol HS; Department of Biology, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia., Alqahtani MD; Department of Biology, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia., Sefrji FO; Department of Biology, College of Science, Taibah University, Al-Madinah Al-Munawwarah, Saudi Arabia., Alshareef SA; Department of Biology, College of Science and Arts at Khulis, University of Jeddah, Jeddah, Saudi Arabia., Alshehrei FM; Department of Biology, Jumum College University, Umm Al-Qura University, Makkah, Saudi Arabia., Abuauf HW; Department of Biology, Faculty of Applied Science, Umm Al-Qura University, Makkah, Saudi Arabia., Baz L; Department of Biochemistry, Faculty of Science, King AbdulAziz University, Jeddah, Saudi Arabia., Tashkandi MA; Department of Biochemistry, College of Science, University of Jeddah, Jeddah, Saudi Arabia., Hakeem IJ; Department of Biochemistry, College of Science, University of Jeddah, Jeddah, Saudi Arabia., Refai MY; Department of Biochemistry, College of Science, University of Jeddah, Jeddah, Saudi Arabia., Abulfaraj AA; Biological Sciences Department, College of Science & Arts, King AbdulAziz University, Rabigh, Saudi Arabia.
المصدر: Frontiers in microbiology [Front Microbiol] 2023 May 16; Vol. 14, pp. 1166148. Date of Electronic Publication: 2023 May 16 (Print Publication: 2023).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne : Frontiers Research Foundation
مستخلص: Introduction: The study aims to describe phageome of soil rhizosphere of M.oleifera in terms of the genes encoding CAZymes and other KEGG enzymes.
Methods: Genes of the rhizospheric virome of the wild plant species Moringa oleifera were investigated for their ability to encode useful CAZymes and other KEGG (Kyoto Encyclopedia of Genes and Genomes) enzymes and to resist antibiotic resistance genes (ARGs) in the soil.
Results: Abundance of these genes was higher in the rhizospheric microbiome than in the bulk soil. Detected viral families include the plant viral family Potyviridae as well as the tailed bacteriophages of class Caudoviricetes that are mainly associated with bacterial genera Pseudomonas, Streptomyces and Mycobacterium . Viral CAZymes in this soil mainly belong to glycoside hydrolase (GH) families GH43 and GH23. Some of these CAZymes participate in a KEGG pathway with actions included debranching and degradation of hemicellulose. Other actions include biosynthesizing biopolymer of the bacterial cell wall and the layered cell wall structure of peptidoglycan. Other CAZymes promote plant physiological activities such as cell-cell recognition, embryogenesis and programmed cell death (PCD). Enzymes of other pathways help reduce the level of soil H 2 O 2 and participate in the biosynthesis of glycine, malate, isoprenoids, as well as isoprene that protects plant from heat stress. Other enzymes act in promoting both the permeability of bacterial peroxisome membrane and carbon fixation in plants. Some enzymes participate in a balanced supply of dNTPs, successful DNA replication and mismatch repair during bacterial cell division. They also catalyze the release of signal peptides from bacterial membrane prolipoproteins. Phages with the most highly abundant antibiotic resistance genes (ARGs) transduce species of bacterial genera Pseudomonas, Streptomyces , and Mycobacterium . Abundant mechanisms of antibiotic resistance in the rhizosphere include "antibiotic efflux pump" for ARGs soxR, OleC , and MuxB , "antibiotic target alteration" for parY mutant , and "antibiotic inactivation" for arr-1 .
Discussion: These ARGs can act synergistically to inhibit several antibiotics including tetracycline, penam, cephalosporin, rifamycins, aminocoumarin, and oleandomycin. The study highlighted the issue of horizontal transfer of ARGs to clinical isolates and human gut microbiome.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
(Copyright © 2023 Ashy, Jalal, Sonbol, Alqahtani, Sefrji, Alshareef, Alshehrei, Abuauf, Baz, Tashkandi, Hakeem, Refai and Abulfaraj.)
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فهرسة مساهمة: Keywords: ARG; CAZyme; HGT; KEGG; antibiotics; cell membrane
تواريخ الأحداث: Date Created: 20230601 Latest Revision: 20230604
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC10227523
DOI: 10.3389/fmicb.2023.1166148
PMID: 37260683
قاعدة البيانات: MEDLINE
الوصف
تدمد:1664-302X
DOI:10.3389/fmicb.2023.1166148