دورية أكاديمية
أعرض في EDS

Genomic Assessment of the Contribution of the Wolbachia Endosymbiont of Eurosta solidaginis to Gall Induction.

التفاصيل البيبلوغرافية
العنوان: Genomic Assessment of the Contribution of the Wolbachia Endosymbiont of Eurosta solidaginis to Gall Induction.
المؤلفون: Fiutek N; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA., Couger MB; Department of Thoracic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA., Pirro S; Iridian Genomes Inc., Bethesda, MD 20817, USA., Roy SW; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA., de la Torre JR; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA., Connor EF; Department of Biology, San Francisco State University, San Francisco, CA 94112, USA.
المصدر: International journal of molecular sciences [Int J Mol Sci] 2023 Jun 01; Vol. 24 (11). Date of Electronic Publication: 2023 Jun 01.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI, [2000-
مواضيع طبية MeSH: Wolbachia*/genetics , Tephritidae*/metabolism, Animals ; Tryptophan ; Insecta/metabolism ; Indoleacetic Acids/metabolism ; Cytokinins ; Genomics
مستخلص: We explored the genome of the Wolbachia strain, w Esol, symbiotic with the plant-gall-inducing fly Eurosta solidaginis with the goal of determining if w Esol contributes to gall induction by its insect host. Gall induction by insects has been hypothesized to involve the secretion of the phytohormones cytokinin and auxin and/or proteinaceous effectors to stimulate cell division and growth in the host plant. We sequenced the metagenome of E. solidaginis and w Esol and assembled and annotated the genome of w Esol. The w Esol genome has an assembled length of 1.66 Mbp and contains 1878 protein-coding genes. The w Esol genome is replete with proteins encoded by mobile genetic elements and shows evidence of seven different prophages. We also detected evidence of multiple small insertions of w Esol genes into the genome of the host insect. Our characterization of the genome of w Esol indicates that it is compromised in the synthesis of dimethylallyl pyrophosphate (DMAPP) and S-adenosyl L-methionine (SAM), which are precursors required for the synthesis of cytokinins and methylthiolated cytokinins. w Esol is also incapable of synthesizing tryptophan, and its genome contains no enzymes in any of the known pathways for the synthesis of indole-3-acetic acid (IAA) from tryptophan. w Esol must steal DMAPP and L-methionine from its host and therefore is unlikely to provide cytokinin and auxin to its insect host for use in gall induction. Furthermore, in spite of its large repertoire of predicted Type IV secreted effector proteins, these effectors are more likely to contribute to the acquisition of nutrients and the manipulation of the host's cellular environment to contribute to growth and reproduction of w Esol than to aid E. solidaginis in manipulating its host plant. Combined with earlier work that shows that w Esol is absent from the salivary glands of E. solidaginis , our results suggest that w Esol does not contribute to gall induction by its host.
References: PLoS Negl Trop Dis. 2014 Apr 24;8(4):e2728. (PMID: 24763283)
Annu Rev Genet. 2010;44:1-24. (PMID: 20649414)
Sci Rep. 2022 Mar 19;12(1):4750. (PMID: 35306514)
Exp Appl Acarol. 2004;34(3-4):291-306. (PMID: 15651526)
J Bacteriol. 2001 Apr;183(7):2219-25. (PMID: 11244060)
Bioinformatics. 2009 Jul 15;25(14):1754-60. (PMID: 19451168)
PLoS Pathog. 2016 Feb 22;12(2):e1005457. (PMID: 26900703)
New Phytol. 2012 Oct;196(2):586-595. (PMID: 22913630)
Genome Res. 2008 Feb;18(2):272-80. (PMID: 18073380)
Pest Manag Sci. 2023 Jan;79(1):315-323. (PMID: 36151871)
Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12669-74. (PMID: 26417108)
Proc Biol Sci. 2005 Feb 22;272(1561):421-9. (PMID: 15734697)
Curr Biol. 2015 Mar 2;25(5):613-20. (PMID: 25660540)
Bioinformatics. 2010 Jul 1;26(13):1608-15. (PMID: 20472543)
Annu Rev Plant Physiol Plant Mol Biol. 2001 Jun;52:89-118. (PMID: 11337393)
Biotechnol Genet Eng Rev. 2008;25:203-43. (PMID: 21412357)
New Phytol. 2001 Jul;151(1):203-212. (PMID: 33873383)
Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18721-6. (PMID: 25512495)
Nat Methods. 2012 Jul 30;9(8):772. (PMID: 22847109)
Annu Rev Entomol. 2005;50:181-99. (PMID: 15355237)
Genome Biol Evol. 2017 Jul 1;9(7):1925-1937. (PMID: 28854601)
Plant J. 2008 Oct;56(2):181-195. (PMID: 18564380)
mSphere. 2019 Nov 13;4(6):. (PMID: 31722991)
PLoS One. 2012;7(6):e38544. (PMID: 22685581)
BMC Genomics. 2009 Jan 20;10:33. (PMID: 19154594)
Annu Rev Plant Physiol Plant Mol Biol. 1997 Jun;48:51-66. (PMID: 15012256)
Curr Biol. 2021 May 10;31(9):1836-1849.e12. (PMID: 33657407)
Biodivers Data J. 2017 May 22;(5):e12581. (PMID: 28765728)
Nat Commun. 2020 Oct 16;11(1):5235. (PMID: 33067437)
Nat Biotechnol. 2018 Nov;36(10):996-1004. (PMID: 30148503)
Nucleic Acids Res. 2001 Jan 1;29(1):41-3. (PMID: 11125044)
Nucleic Acids Res. 1987 Feb 11;15(3):1281-95. (PMID: 3547335)
PLoS Biol. 2005 Apr;3(4):e121. (PMID: 15780005)
PLoS Biol. 2004 Mar;2(3):E69. (PMID: 15024419)
Front Physiol. 2019 Jul 24;10:926. (PMID: 31396099)
Plants (Basel). 2020 Feb 06;9(2):. (PMID: 32041320)
Annu Rev Microbiol. 1999;53:71-102. (PMID: 10547686)
J Insect Physiol. 2017 Aug;101:91-96. (PMID: 28733236)
Mol Plant Microbe Interact. 1994 Nov-Dec;7(6):792-8. (PMID: 7873782)
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. (PMID: 9023104)
Nat Rev Microbiol. 2008 Oct;6(10):741-51. (PMID: 18794912)
PeerJ. 2017 Mar 1;5:e3058. (PMID: 28265520)
Front Microbiol. 2019 Mar 06;10:296. (PMID: 30894837)
Nucleic Acids Res. 2017 Jul 3;45(W1):W171-W179. (PMID: 28472498)
Nature. 1971 Aug 27;232(5313):657-8. (PMID: 4937405)
Appl Environ Microbiol. 2013 Dec;79(24):7696-701. (PMID: 24096415)
Plant Physiol. 2015 Oct;169(2):1001-5. (PMID: 26251310)
Proc Natl Acad Sci U S A. 2007 May 15;104 Suppl 1:8627-33. (PMID: 17494762)
Insect Mol Biol. 2019 Jun;28(3):380-391. (PMID: 30548717)
Nat Commun. 2016 Oct 11;7:13155. (PMID: 27727237)
J Bacteriol. 1995 Aug;177(15):4457-65. (PMID: 7635829)
Mycologia. 2015 Mar-Apr;107(2):245-57. (PMID: 25572099)
Microorganisms. 2021 Jun 16;9(6):. (PMID: 34208724)
PLoS Negl Trop Dis. 2019 Aug 30;13(8):e0007678. (PMID: 31469838)
Planta. 2021 Aug 07;254(3):45. (PMID: 34365553)
Nucleic Acids Res. 2012 Jul;40(13):6235-40. (PMID: 22422838)
BMC Genomics. 2017 Jun 28;18(1):493. (PMID: 28659179)
J Exp Bot. 2011 May;62(8):2431-52. (PMID: 21321050)
Science. 2007 Sep 21;317(5845):1753-6. (PMID: 17761848)
BMC Evol Biol. 2016 May 27;16(1):118. (PMID: 27233666)
Nat Microbiol. 2017 Nov;2(11):1533-1542. (PMID: 28894102)
Sci Rep. 2022 Mar 9;12(1):3811. (PMID: 35264574)
Front Plant Sci. 2019 May 22;10:674. (PMID: 31191583)
PeerJ. 2014 Feb 06;2:e264. (PMID: 24688847)
J Insect Physiol. 2015 Jan;72:43-51. (PMID: 25437243)
mBio. 2017 Sep 26;8(5):. (PMID: 28951473)
Nat Biotechnol. 2019 May;37(5):540-546. (PMID: 30936562)
Insects. 2012 Feb 29;3(1):246-61. (PMID: 26467958)
Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4821-6. (PMID: 25831515)
J Chem Ecol. 2013 Jul;39(7):969-77. (PMID: 23807431)
PLoS Genet. 2019 Nov 4;15(11):e1008398. (PMID: 31682601)
Arthropod Plant Interact. 2021 Jun;15(3):375-385. (PMID: 34149963)
Annu Rev Entomol. 1997;42:587-609. (PMID: 15012323)
Insect Sci. 2017 Dec;24(6):1065-1078. (PMID: 28636152)
Insect Biochem Mol Biol. 2014 Oct;53:66-72. (PMID: 25111299)
Nucleic Acids Res. 2001 Jan 1;29(1):22-8. (PMID: 11125040)
Nucleic Acids Res. 2021 Jan 8;49(D1):D545-D551. (PMID: 33125081)
Trends Microbiol. 2007 Dec;15(12):538-45. (PMID: 18024130)
New Phytol. 2001 Jul;151(1):195-202. (PMID: 33873373)
Nat Biotechnol. 2020 Sep;38(9):1079-1086. (PMID: 32341564)
Genome Res. 2003 Sep;13(9):2178-89. (PMID: 12952885)
Plant Physiol. 1986 Nov;82(3):742-7. (PMID: 16665104)
Front Immunol. 2021 Jan 29;11:626329. (PMID: 33584729)
Front Plant Sci. 2020 Nov 27;11:580155. (PMID: 33329642)
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14280-5. (PMID: 12386340)
PLoS Comput Biol. 2011 Oct;7(10):e1002195. (PMID: 22039361)
PLoS One. 2013 Nov 08;8(11):e78970. (PMID: 24250820)
Nucleic Acids Res. 2016 Jul 8;44(W1):W232-5. (PMID: 27084950)
Bioinformatics. 2009 May 15;25(10):1338-40. (PMID: 19346323)
Brief Bioinform. 2022 Jan 17;23(1):. (PMID: 34657153)
Molecules. 2019 Apr 10;24(7):. (PMID: 30974826)
Mol Plant Microbe Interact. 2007 Jul;20(7):751-8. (PMID: 17601163)
Bioinformatics. 2015 Sep 1;31(17):2794-800. (PMID: 25940563)
Annu Rev Plant Biol. 2006;57:431-49. (PMID: 16669769)
Sci Rep. 2017 Apr 12;7(1):857. (PMID: 28405008)
Biosci Biotechnol Biochem. 2019 Jan;83(1):129-136. (PMID: 30286706)
Planta. 2020 Mar 18;251(4):82. (PMID: 32189080)
Insect Biochem Mol Biol. 2021 Oct;137:103639. (PMID: 34428582)
Mol Biol Evol. 2018 Feb 1;35(2):518-522. (PMID: 29077904)
Res Microbiol. 2002 Oct;153(8):503-9. (PMID: 12437211)
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. (PMID: 33125078)
Microbiology (Reading). 2014 Aug;160(Pt 8):1571-1584. (PMID: 24939187)
Front Microbiol. 2020 Jun 03;11:1080. (PMID: 32582067)
Nat Methods. 2015 Jan;12(1):59-60. (PMID: 25402007)
Protein Sci. 2019 Nov;28(11):1947-1951. (PMID: 31441146)
PeerJ. 2018 Sep 3;6:e5486. (PMID: 30202647)
Plant Cell. 2015 Apr;27(4):1332-51. (PMID: 25888589)
BMC Bioinformatics. 2010 Mar 08;11:119. (PMID: 20211023)
Mol Plant Pathol. 2008 May;9(3):339-55. (PMID: 18705875)
Front Cell Dev Biol. 2020 Nov 09;8:605672. (PMID: 33240900)
Nucleic Acids Res. 2000 Jan 1;28(1):27-30. (PMID: 10592173)
Biol Lett. 2007 Jun 22;3(3):340-3. (PMID: 17412674)
Ann Bot. 2005 Apr;95(5):707-35. (PMID: 15749753)
Annu Rev Phytopathol. 2009;47:133-52. (PMID: 19400643)
Bioinformatics. 2019 Nov 15;:. (PMID: 31730192)
PLoS One. 2013 Jun 18;8(6):e66373. (PMID: 23823081)
RNA Biol. 2017 Sep 2;14(9):1197-1208. (PMID: 28277934)
Bioinformatics. 2004 Jan 22;20(2):289-90. (PMID: 14734327)
Phytopathology. 2004 Nov;94(11):1172-7. (PMID: 18944452)
Proc Biol Sci. 2015 May 22;282(1807):20150249. (PMID: 25904667)
Proc Biol Sci. 2010 Aug 7;277(1692):2311-9. (PMID: 20356892)
J Bacteriol. 2000 Jul;182(14):3885-95. (PMID: 10869063)
Biosci Biotechnol Biochem. 2013;77(9):1942-8. (PMID: 24018692)
Sci Rep. 2022 Apr 4;12(1):5593. (PMID: 35379840)
Microbiol Mol Biol Rev. 2003 Sep;67(3):303-42, table of contents. (PMID: 12966138)
Proc Natl Acad Sci U S A. 2011 May 31;108(22):9250-5. (PMID: 21576469)
Mol Biol Evol. 2013 May;30(5):1188-95. (PMID: 23418397)
Bioinformatics. 2011 Apr 1;27(7):1009-10. (PMID: 21278367)
معلومات مُعتمدة: IRGEN_RG_2021-1345 United States IRGEN IRGEN
فهرسة مساهمة: Keywords: Eurosta solidaginis; Wolbachia; bacterial symbiosis; effector proteins; gall induction; metabolic dependence; phytohormones
المشرفين على المادة: 358-72-5 (3,3-dimethylallyl pyrophosphate)
8DUH1N11BX (Tryptophan)
0 (Indoleacetic Acids)
0 (Cytokinins)
تواريخ الأحداث: Date Created: 20230610 Date Completed: 20230612 Latest Revision: 20230612
رمز التحديث: 20230612
مُعرف محوري في PubMed: PMC10253641
DOI: 10.3390/ijms24119613
PMID: 37298563
قاعدة البيانات: MEDLINE
الوصف
تدمد:1422-0067
DOI:10.3390/ijms24119613