دورية أكاديمية
Population genomic analysis reveals geographic structure and climatic diversification for Macrophomina phaseolina isolated from soybean and dry bean across the United States, Puerto Rico, and Colombia.
| العنوان: | Population genomic analysis reveals geographic structure and climatic diversification for Macrophomina phaseolina isolated from soybean and dry bean across the United States, Puerto Rico, and Colombia. |
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| المؤلفون: | Ortiz V; Department of Plant, Soil and Microbial Sciences, College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI, United States.; Ecology, Evolution and Behavior Program, Michigan State University, East Lansing, MI, United States., Chang HX; Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, Taiwan., Sang H; Department of Integrative Food, Bioscience and Biotechnology, Chonnam National University, Gwangju, Republic of Korea., Jacobs J; Department of Plant, Soil and Microbial Sciences, College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI, United States., Malvick DK; Department of Plant Pathology, University of Minnesota, St. Paul, MN, United States., Baird R; BCH-EPP Department, Mississippi State University, Mississippi State, MS, United States., Mathew FM; Department of Plant Pathology, North Dakota State University, Fargo, ND, United States., Estévez de Jensen C; Department of Agroenvironmental Sciences, University of Puerto Rico, Mayagüez, PR, United States., Wise KA; Department of Plant Pathology, College of Agriculture, Food and Environment, University of Kentucky, Princeton, KY, United States., Mosquera GM; Plant Pathology, Crops for Nutrition and Health, International Center for Tropical Agriculture (CIAT), The Americas Hub, Palmira, Colombia., Chilvers MI; Department of Plant, Soil and Microbial Sciences, College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI, United States.; Ecology, Evolution and Behavior Program, Michigan State University, East Lansing, MI, United States. |
| المصدر: | Frontiers in genetics [Front Genet] 2023 Jun 07; Vol. 14, pp. 1103969. Date of Electronic Publication: 2023 Jun 07 (Print Publication: 2023). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101560621 Publication Model: eCollection Cited Medium: Print ISSN: 1664-8021 (Print) Linking ISSN: 16648021 NLM ISO Abbreviation: Front Genet Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: Lausanne : Frontiers Research Foundation. |
| مستخلص: | Macrophomina phaseolina causes charcoal rot, which can significantly reduce yield and seed quality of soybean and dry bean resulting from primarily environmental stressors. Although charcoal rot has been recognized as a warm climate-driven disease of increasing concern under global climate change, knowledge regarding population genetics and climatic variables contributing to the genetic diversity of M. phaseolina is limited . This study conducted genome sequencing for 95 M. phaseolina isolates from soybean and dry bean across the continental United States, Puerto Rico, and Colombia. Inference on the population structure using 76,981 single nucleotide polymorphisms (SNPs) revealed that the isolates exhibited a discrete genetic clustering at the continental level and a continuous genetic differentiation regionally. A majority of isolates from the United States (96%) grouped in a clade with a predominantly clonal genetic structure, while 88% of Puerto Rican and Colombian isolates from dry bean were assigned to a separate clade with higher genetic diversity. A redundancy analysis (RDA) was used to estimate the contributions of climate and spatial structure to genomic variation (11,421 unlinked SNPs). Climate significantly contributed to genomic variation at a continental level with temperature seasonality explaining the most variation while precipitation of warmest quarter explaining the most when spatial structure was accounted for. The loci significantly associated with multivariate climate were found closely to the genes related to fungal stress responses, including transmembrane transport, glycoside hydrolase activity and a heat-shock protein, which may mediate climatic adaptation for M. phaseolina . On the contrary, limited genome-wide differentiation among populations by hosts was observed. These findings highlight the importance of population genetics and identify candidate genes of M. phaseolina that can be used to elucidate the molecular mechanisms that underly climatic adaptation to the changing climate. Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. (Copyright © 2023 Ortiz, Chang, Sang, Jacobs, Malvick, Baird, Mathew, Estévez de Jensen, Wise, Mosquera and Chilvers.) |
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| فهرسة مساهمة: | Keywords: charcoal rot; climate change; genotype–environment associations; landscape genetics; pathogen adaptation; phylogenomics; redundancy analysis |
| تواريخ الأحداث: | Date Created: 20230623 Latest Revision: 20230701 |
| رمز التحديث: | 20231215 |
| مُعرف محوري في PubMed: | PMC10282554 |
| DOI: | 10.3389/fgene.2023.1103969 |
| PMID: | 37351341 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1664-8021 |
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| DOI: | 10.3389/fgene.2023.1103969 |